Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3614 ATGAAAAATTTGTTTCTTTTTGTTCATCACTCTCTTCGACACAAATCATTGCACAATCTCAAACACACTAAACCATTCTCCTCTGCATCCAAAAAACCAAAATGGAGCTCCCCAACCAACGTTATAATCACAAACCCAACCCTCGTAATAATGGAATCATGTTCAACTATGCGACAACTGAAACAGATTCAAGCACGCATGACTATCACCGGTCTCATTTCCGACGCGTTTCCAATCAGCAGAGTAATCGCGTTCTGCGCACTCGCCGATTCCGGAGATATTCGTTACGCTCATACTCTTTTCAATCGTGTCGAAGAACCCAACACGTTTATGTGGAACACTATGATTAGAGGATATCAAAATGCTCGAATACCCATCGTTGCGTTCTCATTCTTTATGTTTATGATTCGAGGAAGAGTTGAAATGGATTCTAGAAGCTTTGTTTTTGCGCTTAAGGCTTGTGAGCAATTTGAAGAGGTTTTTGTAGGAGAATCGGTGTATTGTGTTGTTTGGAAAATGGGGTTTGATTCTCAGTTGCTTGTGCGAAATGGGTTGATTCATTTTTACTCTGAATATGGTTTGTTGAAATATGCACGTCAAGTGTTTGATGAAAGTTCTGATAAGGATGTTGTTACTTGGACTACTATGATTGATGGGTATGCGGCGCGTAATTGTTCAGATCAGGCTATGGAGTTGTTCAAGTTGATGTTGTTAGGTGATGTTGAGCCTAATGAGGTGACTTTGATTGCCGTGCTTTCGGCTTGCTCTGAGATGGGTGACCTTGAAACGGGGAAGAGAGTTTATGAAAAAGTGGAAGAGAAGAATGTGAGATGCAGCTTGAGTTTGTACAATGCCTTGTTGGACGTGTATGTGAAATGTGGTAGTTTGGTTGATGCTAAAGAGCTTTTTGATAGAATGGAAACCAGAGATGTTTACTCGTGGACTAGTATGGTTAATGGGTATGCGAAATGTGGTGACTTGGAATCTGCTAGGATGTTTTTTGATCTAACTCCTCAGAAAAATGTGGTTTCTTGGAATGCAATGATTGCAGGTTATTCTCAGAATAACAAACCCAAGGAATCGTTGAAATTGTTTCATGAAATGATTGGGGGAGGTCTGGTTCCCGTTGAGCAGACCTTAGTGAGTGCACTCTCTGCTTGTAGCCAGCTCACTTGCTTGAATTTGGGTCATTGGATTCACCAACATTTTGTTGTTGAGCAAAGAATCCCCCTTAGTGTTACTCTTGCAAATGCAATTATAGATATGTATGCCAAATGTGGAAGCATAGATGCAGCGGCAGAAGTTTTTAGTACAACGCCAGAGAGAAATCTGATTTCTTTGAATTCCATGATTGCAGGGTATGCTGCTAATGGTAGAGCAGAGCAAGCCATCAATGTATTTGATCAGATAATAAATATGGGATTTAAGCCGGATAATATCACATTTGTGAGTTTGTTGACAGCTTGCAGCCATGGTGGTTTAATTTCCGAAGGTCGAGAATATTTTGACAACATGGAGAGAAACTATGGGATAAAACCCCAAAGAGGACATTATGCATGTATGGTTGATCTACTAGGTCGAACTGGACTCGTGGAAGAAGCTTATGAGTTAATAACAAATATGCCAATGCAACCTTGTGAGGCTGCTTGGGGAGCCCTTCTAAATGCTTGTAGAATGCATGGCAATGTCGAGCTTGCAAGATTGTCGGCGCAAAATCTTCTAAGCTTGGATCCTGAAGACAGTGGAATATATGTGCTTCTAGCAAATACGTGTGCTAATGATAGAAAATGGAGTGATGTAAGGAGGGTAAGAAGTTTGATGAGAGACAAGGGTGTGAAGAAGATACCTGGTCATAGCTTAATAGATATAGATGGCGAGTTTATAGAATTTTTGGTGGCTGATGAATCACACCCTCAATCTGAGGAGATTTACAAAGTACTGGATGAAATGCTTTTGTTGTCAAAATTGGAAGATAGTTGTGAGTTATAG 1989 0.4042 MKNLFLFVHHSLRHKSLHNLKHTKPFSSASKKPKWSSPTNVIITNPTLVIMESCSTMRQLKQIQARMTITGLISDAFPISRVIAFCALADSGDIRYAHTLFNRVEEPNTFMWNTMIRGYQNARIPIVAFSFFMFMIRGRVEMDSRSFVFALKACEQFEEVFVGESVYCVVWKMGFDSQLLVRNGLIHFYSEYGLLKYARQVFDESSDKDVVTWTTMIDGYAARNCSDQAMELFKLMLLGDVEPNEVTLIAVLSACSEMGDLETGKRVYEKVEEKNVRCSLSLYNALLDVYVKCGSLVDAKELFDRMETRDVYSWTSMVNGYAKCGDLESARMFFDLTPQKNVVSWNAMIAGYSQNNKPKESLKLFHEMIGGGLVPVEQTLVSALSACSQLTCLNLGHWIHQHFVVEQRIPLSVTLANAIIDMYAKCGSIDAAAEVFSTTPERNLISLNSMIAGYAANGRAEQAINVFDQIINMGFKPDNITFVSLLTACSHGGLISEGREYFDNMERNYGIKPQRGHYACMVDLLGRTGLVEEAYELITNMPMQPCEAAWGALLNACRMHGNVELARLSAQNLLSLDPEDSGIYVLLANTCANDRKWSDVRRVRSLMRDKGVKKIPGHSLIDIDGEFIEFLVADESHPQSEEIYKVLDEMLLLSKLEDSCEL* 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3614 662 PANTHER - 194 323 - -
Tpr6g3614 662 PANTHER - 319 650 - -
Tpr6g3614 662 PANTHER - 91 273 - -
Tpr6g3614 662 TIGRFAM PPR: pentatricopeptide repeat domain 480 513 IPR002885 -
Tpr6g3614 662 TIGRFAM PPR: pentatricopeptide repeat domain 343 375 IPR002885 -
Tpr6g3614 662 TIGRFAM PPR: pentatricopeptide repeat domain 446 478 IPR002885 -
Tpr6g3614 662 TIGRFAM PPR: pentatricopeptide repeat domain 211 245 IPR002885 -
Tpr6g3614 662 TIGRFAM PPR: pentatricopeptide repeat domain 312 336 IPR002885 -
Tpr6g3614 662 TIGRFAM PPR: pentatricopeptide repeat domain 282 311 IPR002885 -
Tpr6g3614 662 Gene3D Tetratricopeptide repeat domain 289 407 IPR011990 GO:0005515
Tpr6g3614 662 Gene3D Tetratricopeptide repeat domain 173 265 IPR011990 GO:0005515
Tpr6g3614 662 Gene3D Tetratricopeptide repeat domain 51 172 IPR011990 GO:0005515
Tpr6g3614 662 Gene3D Tetratricopeptide repeat domain 420 650 IPR011990 GO:0005515
Tpr6g3614 662 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 341 375 IPR002885 -
Tpr6g3614 662 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 279 313 IPR002885 -
Tpr6g3614 662 PANTHER - 91 273 - -
Tpr6g3614 662 PANTHER - 319 650 - -
Tpr6g3614 662 PANTHER - 194 323 - -
Tpr6g3614 662 Pfam PPR repeat family 340 387 IPR002885 -
Tpr6g3614 662 Pfam PPR repeat family 443 490 IPR002885 -
Tpr6g3614 662 Pfam PPR repeat family 208 255 IPR002885 -
Tpr6g3614 662 Pfam PPR repeat 518 541 IPR002885 -
Tpr6g3614 662 Pfam PPR repeat 417 437 IPR002885 -
Tpr6g3614 662 Pfam PPR repeat 312 336 IPR002885 -
Tpr6g3614 662 Pfam PPR repeat 110 137 IPR002885 -
Tpr6g3614 662 Pfam PPR repeat 282 310 IPR002885 -
Tpr6g3614 662 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 443 477 IPR002885 -
Tpr6g3614 662 SUPERFAMILY TPR-like 321 596 IPR011990 GO:0005515
Tpr6g3614 662 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 209 243 IPR002885 -
Tpr6g3614 662 Pfam E motif 560 621 IPR046848 -
Tpr6g3614 662 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 244 278 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3614 Tpr-Chr6 39307538 39312041 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3614 65 651 Glycoside Hydrolase AT3G49170 31.773 8.87e-98 317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3614 - - mtr:MTR_7g093900 1042.34