Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3590 ATGTTGTTCTTCTCATACTTCAAAGATTTGGTTGGAAAAGAAGTCACTGTTGAACTCAAGAACGATTTAGCCATCAGAGGAACATTGCATTCTGTTGATCAATACCTCAATATCAAGCTCGAAAACACTCGTGTTGTTGATCAAGACAAATACCCTCACATGCTTTCTGTAAGGAACTGCTTCATCAGGGGATCTGTGGTGAGATACGTGCAATTGCCAACAGAAGGTGTGGACATTGACCTATTGCACGATGCCACAAGAAGAGAAGCCCGGGGTGGTTGA 282 0.4291 MLFFSYFKDLVGKEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPTEGVDIDLLHDATRREARGG* 94
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3590 93 Gene3D - 1 92 - -
Tpr6g3590 93 CDD LSm2 2 90 IPR016654 GO:0006397
Tpr6g3590 93 Pfam LSM domain 7 71 IPR001163 -
Tpr6g3590 93 PANTHER SNRNP CORE PROTEIN FAMILY MEMBER 1 91 IPR016654 GO:0006397
Tpr6g3590 93 SMART Sm3 5 72 IPR001163 -
Tpr6g3590 93 PIRSF Lsm2 1 93 IPR016654 GO:0006397
Tpr6g3590 93 SUPERFAMILY Sm-like ribonucleoproteins 3 92 IPR010920 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3590 Tpr-Chr6 38989704 38994613 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3590 K12621 - pop:18098278 186.422
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g3590 6 38989704 38994613 Tpr6g3590 6 38989704 38994613 ECH