Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3581 ATGGCAAATCTTTTGCCATCAATTTCATTCTCAGCGACTCCACTCAATCAGCATAAATACAGAACTAAATGCTCCTTTTTTCACATCCACAGGAAGCATCAGCAAGATCTCGTTATACCCTTTTCTCAGAATTTCACTTCAAAAATGTGTGCTACATCAAAGTTGTCTATAGAAGAAACTGAGCAGAAAGTGATTCCTTTTACACAATCAGAAGACATCAAAACATCATTGTCTTATTTGTTTAGAACAGAAATAGATGAAGGTTTGGTTAAAGTTTATGTTAAAAAGAAAAAAGTTAGTTATTTTGTTTATATTGAGGTTTCTTCTTTGGAGTTATTAAGGAATGTTGAAGGGGAAACATTGGTGTTGTGTTGGGGTGTGTATAGTGATGATTCATCAAGTGTTGATGATGTAAAAGGGATGAATTTGAGTTCATTGGTGAAGAATTCTGTTGGAAAATTTTCAGTTGAATTGGAATTTGATGTTGAAAAAGTTCCTTTTTACTTATCTTTTTTGTTGAGATTTTCTGGGTTGGAAATTAGAACCCATTTGAAAAAGAATTTCTGTGTGCCTGTTGGTTTTTTTCGGGGTCGTCCGTCTCCATTGGGGATCTCATTTTCCCCTGACGGGTCTATCAATTTCGCTGTTTTTTCAAGGCATGCTGAGAGTGTGGTATTGTGTTTATATGATGATGATGATAGTGGTGTGGATAAGCCTGCTTTGGAGATTGATCTTGATCCTTATGTTAATAGATCAGGTGATATTTGGCATATATCTTTTGAGAGTGTAAGGAATTTTGTGAGATACGGTTATCGATTCAGAGGAGCTAACAGGGATAGTAGTTATTCTGAGTGTGTTGTTTTGGATCCTTATGCTAGAATTGTTGGCAATTCATTTCAGAATGGTGTTGGATCGGCGAAGAATCTTGGATTATTGAAAAAGGAACCTGCTTTTGATTGGGGTGATGATTATCATCCGAATTTGGAAATGGAGAAACTAGTGGTGTATAGGTTGAATGTGAAGCGCTTTACCGAGCATGAATCGAGTCAACTTTCTAGTGATTTAGCTGGGACATTTTCTGGTTTGTGTAAAAAGCTGCAGCATTTTAAAGATCTTGGTGTGAATGCTGTTCTGTTGGAACCGGTTTTCAAGTTTGATGAGAAAAAGGGACCTTATTTTCCTTGTCATTTTTTCTCCCCGATGAACCTTTATGGACCATCCGGAGAATCTGTATCTACTATAAACTCTATGAAAGAGATGGTGAAAACTATGCATGCCAATGGGATAGAAGTTATAATGGAAGTTGTTTTCTCCAATACTGCTGAGACCGGTGCTCTACAAGGTATTGATGACTTATCTTACTATTATGCAAATGGGGTCGGTGATTCGAAGGTACACAGTGCTTTGAATTGTAACTATCCTATAGTGCAAAATTTGATTTTGGATAGCCTTAGGCATTGGGTAACTGAGTTTCACATTGATGGTTTTTCTTTTGTAAATGCTTCACATTTGTTGAGGGGGTTTCATGGAGAATACTTGTCTCGACCTCCCTTGGTCGAAGCAATTGCTTTCGATCCAGTAATGTGGAAAACTAAAATAATTGCAGATTGTTGGGATCCCAATGACATGGAACCAAAGGAGACTCGCTTTCCTCATTGGACGAGATGGGCTGAAATAAATACAAATTTCTGCAACGATGTGAGGAACTTTCTAAGAGGTGAAAGTCTTATTAGCAATCTTGCAACAAGACTTTGTGGGAGCGGAGACGTGTATTCCGACGGAAGAGGCCCAGCATTCTCTTTTAATTATGTTGCCGGGAATTTTGGACTTTCTCTTGTGGACTTGGTCAGCTTCAGCAGTGGTGATCTGGAGGCGGAGTTAAGTTGGAACTGCGGAGAAGAAGGACCTACTAATAAAATTGTTGTCCTCGAAAGACGACTCAAACAAATCCGTAATTTCCTATTCATCTTGTTTGTGTCATTAGGAGTTCCTATTTTGAACATGGGAGATGAGTGTGGTCATTCTTCTGGTGGTTCTCCTGCATATGGTGACACAAAGCCCTTTAATTGGGCTGCTTTGAAAACAGGTTATGGTAAACAAACCACACAATTCATTTCCTTTTTGTCTTCGTTGAGAACGAGGCGGAGTGATCTTCTTCAAAGTAAGAGCTTCTTAAAAGAAGAAAACATCGAATGGCGCGGAATTGACATGGCTCCGCCAAGGTGGGAAGACCCGTCCTGCAAGTTCCTGGCCATGAATTTGAAGGCTGAAAGAAATGAGCTACAAGAGAGCTCTGCATCTTCTGATATATCAGGCGATTTATTTATTGCCTTCAATGCAGATGATCACCCAGAGACTGTAGTTTTGCCCTTGCCTCCAGAAGGGATGTCATGGTACCGCTTAGTCGATACTGCTCTTCCATTTCCCGGGTTTTTCTTGACCAATGGTGATATTGTCCCTGAGCAAATATCAGGTTTGTATACTTATGAAATGAAGTCTTACAGCTGCACTTTGTTTGAGGCAAACAATAGTAATATTTAG 2541 0.3912 MANLLPSISFSATPLNQHKYRTKCSFFHIHRKHQQDLVIPFSQNFTSKMCATSKLSIEETEQKVIPFTQSEDIKTSLSYLFRTEIDEGLVKVYVKKKKVSYFVYIEVSSLELLRNVEGETLVLCWGVYSDDSSSVDDVKGMNLSSLVKNSVGKFSVELEFDVEKVPFYLSFLLRFSGLEIRTHLKKNFCVPVGFFRGRPSPLGISFSPDGSINFAVFSRHAESVVLCLYDDDDSGVDKPALEIDLDPYVNRSGDIWHISFESVRNFVRYGYRFRGANRDSSYSECVVLDPYARIVGNSFQNGVGSAKNLGLLKKEPAFDWGDDYHPNLEMEKLVVYRLNVKRFTEHESSQLSSDLAGTFSGLCKKLQHFKDLGVNAVLLEPVFKFDEKKGPYFPCHFFSPMNLYGPSGESVSTINSMKEMVKTMHANGIEVIMEVVFSNTAETGALQGIDDLSYYYANGVGDSKVHSALNCNYPIVQNLILDSLRHWVTEFHIDGFSFVNASHLLRGFHGEYLSRPPLVEAIAFDPVMWKTKIIADCWDPNDMEPKETRFPHWTRWAEINTNFCNDVRNFLRGESLISNLATRLCGSGDVYSDGRGPAFSFNYVAGNFGLSLVDLVSFSSGDLEAELSWNCGEEGPTNKIVVLERRLKQIRNFLFILFVSLGVPILNMGDECGHSSGGSPAYGDTKPFNWAALKTGYGKQTTQFISFLSSLRTRRSDLLQSKSFLKEENIEWRGIDMAPPRWEDPSCKFLAMNLKAERNELQESSASSDISGDLFIAFNADDHPETVVLPLPPEGMSWYRLVDTALPFPGFFLTNGDIVPEQISGLYTYEMKSYSCTLFEANNSNI* 847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3581 846 Pfam Alpha amylase, catalytic domain 357 443 IPR006047 GO:0005975
Tpr6g3581 846 Gene3D Glycosidases 314 727 - -
Tpr6g3581 846 SUPERFAMILY (Trans)glycosidases 316 717 IPR017853 -
Tpr6g3581 846 PANTHER ISOAMYLASE 2, CHLOROPLASTIC 53 844 - -
Tpr6g3581 846 SUPERFAMILY E set domains 197 326 IPR014756 -
Tpr6g3581 846 CDD AmyAc_plant_IsoA 331 720 IPR044096 GO:0019156|GO:0019252
Tpr6g3581 846 SUPERFAMILY Glycosyl hydrolase domain 727 841 - -
Tpr6g3581 846 PANTHER GLYCOGEN DEBRANCHING ENZYME 53 844 - -
Tpr6g3581 846 SMART aamy 337 714 IPR006047 GO:0005975
Tpr6g3581 846 CDD E_set_GDE_Isoamylase_N 200 337 IPR044505 -
Tpr6g3581 846 Gene3D - 728 846 IPR013780 -
Tpr6g3581 846 Gene3D Immunoglobulins 190 311 IPR013783 -
Tpr6g3581 846 Pfam Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 201 292 IPR004193 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3581 Tpr-Chr6 38918226 38921502 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3581 25 845 Glycoside Hydrolase AT1G03310 56.014 0.0 915
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3581 K01214 - gmx:100777953 1217.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g3581 6 38918226 38921502 Tpr6g3581 6 38918226 38921502 ECH