Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3540 ATGGACGAAGAAGTTACAACTGAAAGCAGAAAAGAAACCGAAGTAGCACCAGCCCTAATCGCCGTCCACCCAACCGGCCACCACATCGCCGTAGCAGTCGGACCGGAGCTCCGCATCTTCAACCTCCTTAACAATTCTGCAGTTTCTTTACACGACGATTCCATCTCCGGTGACAATCACTTCCATAAAGATAATATCAGAGCAATTCGATTCGGTGCTAAAGGAAAACTATTCGTATCCGCTGGTGATGATAAAACCCTAAAAATTTGGTCAGCGGAATCTTGGCATTGTATTTTGACAGTTTCGTCGGAGAAGAGAGTTACTGCTGTTGCTATAAGCAACGACGGTTTGTATGTGTGTTTTGCTGATAAATTTGGACTTGTTTGGGTTGTGGATCTTAATCAAACTTCAATTGATAAGAAACCGATGCCGCTTCTTTCGCATTATTGTAGTATTATCACTAGTTTGGAATTTTCGCCGGATAATCGGTTTATTATCAGTGCTGATAGGGATTTTAAAATTCGTGTTACTAATTTTCCCAAGAATCCTTTAAATGGAGCTCACGAGATACAGAGTTTTTGTCTTGGTCATACAGAGTTTGTTTCCTGCCTTGCCTTCGTTCCTGCTCAGGAAAGCCCTCACAGTCTTCTACTATCTGGAAGTGGTGATTCCACAGTCCGATTGTGGGATATCTCCTCTGGAGCACTCCTAGATACTTGTGAGGTTGCAGTTAAGGCAGGGCTTTTAGAGTCCAATGACAACACAGAAGAGCATGGCCATGCTGTTACTGATTTATGTACCACCCTGGATGGTTTGCTTGTTGCTGTGGCCATTCAGAGCTTGCGAGGAATTGTGTTGTTGAGTTACAATGTTTCTGCACAAACACTTTCTGTAGCCAAGGTTGTTTCTATTGCAGGAGACACCTTTGTCCCTACCTGCCTGGCGAACAGCCCGCCTACAAGGGAATTGTGGATGGTTACAGGTGTCTCCAGTTTACCTGGTTATGATTACCCCTCTTTGGCTCGTGTTCTAGTAATTTCTGGTATTGATGCTGACCAAGAGCCAGTTGTTCTGGGAGACGATAAGATACCTGGGGGAGTAAAGCTGCTAGAAACGTTACAAGGAACTGCAGCTGTTGACGACAATGCTTTTTCGGTAGCAGCTGAAGCTGTCAAAGCAGCAATGTGTAACCTATTGATAAAAAAGCAATACCCTTTCGAGAATAGAGAATATAGAAAGAAAACCAGAAATGACAGAAAACTCAAAGAATAG 1272 0.4347 MDEEVTTESRKETEVAPALIAVHPTGHHIAVAVGPELRIFNLLNNSAVSLHDDSISGDNHFHKDNIRAIRFGAKGKLFVSAGDDKTLKIWSAESWHCILTVSSEKRVTAVAISNDGLYVCFADKFGLVWVVDLNQTSIDKKPMPLLSHYCSIITSLEFSPDNRFIISADRDFKIRVTNFPKNPLNGAHEIQSFCLGHTEFVSCLAFVPAQESPHSLLLSGSGDSTVRLWDISSGALLDTCEVAVKAGLLESNDNTEEHGHAVTDLCTTLDGLLVAVAIQSLRGIVLLSYNVSAQTLSVAKVVSIAGDTFVPTCLANSPPTRELWMVTGVSSLPGYDYPSLARVLVISGIDADQEPVVLGDDKIPGGVKLLETLQGTAAVDDNAFSVAAEAVKAAMCNLLIKKQYPFENREYRKKTRNDRKLKE* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3540 423 PANTHER WD40 REPEAT PROTEIN 4 18 420 IPR028884 GO:0036265
Tpr6g3540 423 Hamap tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit <gene_name> [WDR4]. 26 415 IPR028884 GO:0036265
Tpr6g3540 423 Gene3D - 16 104 IPR015943 GO:0005515
Tpr6g3540 423 Pfam WD domain, G-beta repeat 61 91 IPR001680 GO:0005515
Tpr6g3540 423 Pfam WD domain, G-beta repeat 194 230 IPR001680 GO:0005515
Tpr6g3540 423 Pfam WD domain, G-beta repeat 147 176 IPR001680 GO:0005515
Tpr6g3540 423 ProSiteProfiles Trp-Asp (WD) repeats profile. 59 100 IPR001680 GO:0005515
Tpr6g3540 423 Gene3D - 105 362 IPR015943 GO:0005515
Tpr6g3540 423 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 59 94 - -
Tpr6g3540 423 ProSiteProfiles Trp-Asp (WD) repeats profile. 194 239 IPR001680 GO:0005515
Tpr6g3540 423 SUPERFAMILY WD40 repeat-like 19 348 IPR036322 GO:0005515
Tpr6g3540 423 SMART WD40_4 186 230 IPR001680 GO:0005515
Tpr6g3540 423 SMART WD40_4 139 178 IPR001680 GO:0005515
Tpr6g3540 423 SMART WD40_4 52 91 IPR001680 GO:0005515
Tpr6g3540 423 SMART WD40_4 94 130 IPR001680 GO:0005515
Tpr6g3540 423 ProSitePatterns Trp-Asp (WD) repeats signature. 217 231 IPR019775 -
Tpr6g3540 423 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 194 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3540 Tpr-Chr6 38341325 38345017 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3540 62 237 Miscellaneous Gene Families AT5G08390 25.556 2.05e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3540 K15443 - gmx:100809122 644.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g3540 6 38341325 38345017 Tpr6g3540 6 38341325 38345017 ECH