Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3539 ATGTCTGAACTGATTGAAGGACTTCCTGATGCTGTTGCAATAAGGTGCCTTGCACGTGTTCCCTTCTACCTCCACCCAAAGTTAGAGGTTGTCTCTCGTTCTTGGCAAGCAGCCATTCACAGCCCAGAACTATCCAAAATTCGACAGGAGGTTGCTTCATCTGAGGATCTCTTGTGTGTCTGTGCTTTTGATCCAGAGAATGTATGGCAGCTTTATGACCCTCTAAGAGATCTCTGGATTACGCTTCCTGTTCTTCCCTCAAAGATCAGGCACCTTTCTCACTTTGGTGCTGTATCCACAGCTGGAAAGTTGTTTGTCATTGGCGGTGGAAGTGATGCTGTTGATCCTTCGACCGGTGATCATGATGGATGTTTTGCAACCGATGAAGTCTGGTCATATGACCCGATAATCAAGCAGTGGTCTCCTCGGGCTCCAATGCTTGTTCCCCGTTCTATGTTCGCGTGCTGTGTTTTGAATGGGAAAATTGTTGTCGCTGGGGGATTCACTAGCTGTAGAAAAACAATATCTCAAGCAGAAATTTACGACCCTGAGAAGGATTTATGGACTCCATTGCCTGATCTTCACCGCACTCAAAATTCAGCCTGTTCAGGAATAGTGATTGGTGGAAAGATGCATGTACTGCACAAGGACATGTCAACAGTGCAAGTTTTAGACAATGCAGGGGCTAGATGGATCGTTGAGGAGTGTGATTGGCTTCAAGGTCCAATGGCAGTAGTCCAGGATGCACTTTGTGTTATGAGCAATGGATCTATCATAAAGCAGGACAAAGAAGGGAGAAAGATTGTAAGTTCAGCAACAGATTTTAAGAAGAGAATTGGGTTTGCAATGATTGGACTTGGCGATAATTTGTATATGATCGGAGGCGTCATTGGACCTGACAGATGGAATTGGGACATTAAACCATTATCAGATGTTGATGTTCTCACACTTGGGAGTGAGAGACCAACTTGGCGCCAAGTAGCTCCAATGACAAGATGCCGTGGTACCATTGTTGGTTGTACACTGCTGAGAATTTAA 1038 0.4509 MSELIEGLPDAVAIRCLARVPFYLHPKLEVVSRSWQAAIHSPELSKIRQEVASSEDLLCVCAFDPENVWQLYDPLRDLWITLPVLPSKIRHLSHFGAVSTAGKLFVIGGGSDAVDPSTGDHDGCFATDEVWSYDPIIKQWSPRAPMLVPRSMFACCVLNGKIVVAGGFTSCRKTISQAEIYDPEKDLWTPLPDLHRTQNSACSGIVIGGKMHVLHKDMSTVQVLDNAGARWIVEECDWLQGPMAVVQDALCVMSNGSIIKQDKEGRKIVSSATDFKKRIGFAMIGLGDNLYMIGGVIGPDRWNWDIKPLSDVDVLTLGSERPTWRQVAPMTRCRGTIVGCTLLRI* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3539 345 PANTHER F-BOX/KELCH-REPEAT PROTEIN SKIP30 2 345 - -
Tpr6g3539 345 Gene3D - 64 343 IPR015915 GO:0005515
Tpr6g3539 345 PANTHER F-BOX/KELCH-REPEAT PROTEIN SKIP4 2 345 - -
Tpr6g3539 345 SUPERFAMILY Kelch motif 61 334 IPR015915 GO:0005515
Tpr6g3539 345 SMART kelc_smart 289 344 IPR006652 GO:0005515
Tpr6g3539 345 SMART kelc_smart 161 208 IPR006652 GO:0005515
Tpr6g3539 345 SMART kelc_smart 103 160 IPR006652 GO:0005515
Tpr6g3539 345 Pfam Kelch motif 92 146 IPR006652 GO:0005515
Tpr6g3539 345 Pfam Kelch motif 149 194 IPR006652 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3539 Tpr-Chr6 38334086 38338260 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3539 8 191 Miscellaneous Gene Families AT4G33900 27.461 1.50e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3539 - - cam:101512165 662.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g3539 6 38334086 38338260 Tpr6g3539 6 38334086 38338260 ECH