Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3496 ATGGCCATTGCACTGAAATCATTTTGCTTCTTACACTTGAAGAAACCTGAAACCGATTTTCCGGTCGGTTTTTCTTCCAAGAAAGCTACTATAATCTCAGTTAAAAGATACACTTCGATGTCTGCTAGTGCTATCAGAACCAGTGGAGCAGTTAGCATCTCTGAAACATTCAAAAAGCTGAAGAAACAAGGAAAAGTGGCATTAATTCCATATATCACAGCTGGTGATCCTGATCTTTCAACCACAGCAGAAGCATTGAAAGTTCTTGATTCATGTGGATCTGACATTATTGAGCTCGGTGTTCCTTACTCCGATCCTTTGGCAGATGGTCCTGTTATTCAGGCTGCTTCAACAAGATCTTTAGCAAGGGGGACCAATTTTGATTCAATTATTTCAATGCTGAAGGGGGTAGTTCCAGAATTATGTACTCCAATTGCATTGTTTACTTATTACAATCCAATACTGAAGCGTGGTACCGAGAAATTTATGTCCATTGTAAGAGACACCGGTGTTCATGGACTTGTAGTCCCTGATGTTCCTCTGGAAGAGACAGAAATTTTAAGGACAGAAGCTAAGAAGAAGGGAATTGAACTGGTACTACTCACAACACCTACCACACCGGAATACCGAATGAAAGCCATTGTTGATGGCGCGGAAGGATTCGTGTATCTTGTGAGCTCTTTGGGGGTCACCGGAACACGAGCATCAATTAGTGGTAGAGTTCAAGCTCTTCTGCAGGAAATCAAAGAGTCAACAACTAAGCCAGTGGCAGTAGGATTTGGGATATCAACAGCTGAGCAAGTAAAGCAGGTTGCGGGATGGGGAGCTGATGGTGTGATTGTTGGAAGTGCTATGGTGAAGTTGCTTGGTGAAGCCAAAACTCCTGAAGAGGGATTGAAAGAACTGGAAAATTTCACTCTCTCCTTAAGATCAGCACTTGATTGA 945 0.4243 MAIALKSFCFLHLKKPETDFPVGFSSKKATIISVKRYTSMSASAIRTSGAVSISETFKKLKKQGKVALIPYITAGDPDLSTTAEALKVLDSCGSDIIELGVPYSDPLADGPVIQAASTRSLARGTNFDSIISMLKGVVPELCTPIALFTYYNPILKRGTEKFMSIVRDTGVHGLVVPDVPLEETEILRTEAKKKGIELVLLTTPTTPEYRMKAIVDGAEGFVYLVSSLGVTGTRASISGRVQALLQEIKESTTKPVAVGFGISTAEQVKQVAGWGADGVIVGSAMVKLLGEAKTPEEGLKELENFTLSLRSALD* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3496 314 TIGRFAM trpA: tryptophan synthase, alpha subunit 57 309 IPR002028 GO:0004834|GO:0006568
Tpr6g3496 314 Pfam Tryptophan synthase alpha chain 57 307 IPR002028 GO:0004834|GO:0006568
Tpr6g3496 314 PANTHER TRYPTOPHAN SYNTHASE ALPHA CHAIN 48 314 - -
Tpr6g3496 314 SUPERFAMILY Ribulose-phoshate binding barrel 53 293 IPR011060 -
Tpr6g3496 314 PANTHER TRYPTOPHAN SYNTHASE, ALPHA CHAIN 48 314 IPR002028 GO:0004834|GO:0006568
Tpr6g3496 314 CDD Tryptophan_synthase_alpha 67 310 IPR002028 GO:0004834|GO:0006568
Tpr6g3496 314 ProSitePatterns Tryptophan synthase alpha chain signature. 97 110 IPR018204 GO:0004834
Tpr6g3496 314 Hamap Tryptophan synthase alpha chain [trpA]. 63 312 IPR002028 GO:0004834|GO:0006568
Tpr6g3496 314 Gene3D Aldolase class I 51 314 IPR013785 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3496 Tpr-Chr6 37802896 37805078 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3496 K01695 - gmx:732610 471.855