Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3401 ATGTCTGGTGATTTCCTTCCTGAAAATTCAATTGTGGTGGGGTGTGGAGCTGTGGGATTGGATTTGTTGGCCACTGTTGCTGCTTTTCCTCAGCCAGATCAAAAAATCAGAAGCACTTCCTTCAAGACTCAAGGAGGTGGTAACACAGGCAATGCCTTAACCTGCGCGGCTCGCTTGGGCCTCAAGCCAAGGATCATCTCCAAGATAGCAGACGACACTCAAGGAAGGAGAATATTAGATGAACTACAGGCTGATGGCGTGGATACCTCCTTTATAGTGGTATCTAAGGAAGGCACTTCACCATTTACCTATATCATTGTTGACAACCAAACCAAGTCGCGTACTTGTTTACATACACCAGGATTTCCTCCAATGAAACCAGCTGATCTTACCGAATCAAGTTTGTTATCTGCGTTGAATGGAACGAAAATTGCTTATTTAGATGGGAGATTGCATGAAACTGCTCTAGTTGTTGCGCACGAGGCGGTTAAGAAGAATATACCTATCTTAATGGATGCAGAAAGGCCAAGAGAAGGGTTGGATGATCTCATCAAAGTAGTTGATTATGTTGTATGCGCTGCACAGTTTCCGCAGGTATGGACAGAGGCAGCAACTGTTCCAAAAGCACTTGTTTCTATGCTTCTAAGGTTGCCAAAAGTCAAATTTGTGATTGTAACTTTGGGAAAAGATGGTTGTATAATGCTTGAGAGAACTGCTAATGAGGTTCCATCCACAGAAGAAGAAATGGATGTTGACCAATTACTGGAATCTCTGGAAACAAAAAAGAATGCGAGCATTAACATTCCAACCTGCATATCATCGTCGGTGACAAATTTGCGAGCAGATGGTATAGGAACAATTTGTGGTAAGTTATATATCGGAACAGCTGAAAACATACCACCATACGAGCTTATTGATACCACTGGTGCTGGTGATGCATTCGCCGGAGCTGTTCTCTACGCTATCTGCGCCAACTTCGCAACAGAGAAAATGCTATGCTTTGCTGCTAATGTGGCAGCTGCTAAGTGCAGAGCTCTAGGGGCGCGAAGTGGTCTTCCTCGCTACAACGATCAGTGCCTAGCATCCTTCAGGGAGTAG 1098 0.4435 MSGDFLPENSIVVGCGAVGLDLLATVAAFPQPDQKIRSTSFKTQGGGNTGNALTCAARLGLKPRIISKIADDTQGRRILDELQADGVDTSFIVVSKEGTSPFTYIIVDNQTKSRTCLHTPGFPPMKPADLTESSLLSALNGTKIAYLDGRLHETALVVAHEAVKKNIPILMDAERPREGLDDLIKVVDYVVCAAQFPQVWTEAATVPKALVSMLLRLPKVKFVIVTLGKDGCIMLERTANEVPSTEEEMDVDQLLESLETKKNASINIPTCISSSVTNLRADGIGTICGKLYIGTAENIPPYELIDTTGAGDAFAGAVLYAICANFATEKMLCFAANVAAAKCRALGARSGLPRYNDQCLASFRE* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3401 365 PRINTS Ribokinase signature 14 35 IPR002139 GO:0016301
Tpr6g3401 365 PRINTS Ribokinase signature 41 60 IPR002139 GO:0016301
Tpr6g3401 365 PRINTS Ribokinase signature 223 234 IPR002139 GO:0016301
Tpr6g3401 365 CDD ribokinase_group_B 11 354 - -
Tpr6g3401 365 Gene3D - 11 350 IPR029056 -
Tpr6g3401 365 ProSitePatterns pfkB family of carbohydrate kinases signature 2. 306 319 IPR002173 GO:0016773
Tpr6g3401 365 PANTHER PHOSPHOTRANSFERASE SYSTEM TRANSPORT PROTEIN 6 364 - -
Tpr6g3401 365 Pfam pfkB family carbohydrate kinase 297 353 IPR011611 -
Tpr6g3401 365 Pfam pfkB family carbohydrate kinase 17 244 IPR011611 -
Tpr6g3401 365 PANTHER PFKB FAMILY CARBOHYDRATE KINASE 6 364 - -
Tpr6g3401 365 SUPERFAMILY Ribokinase-like 12 356 IPR029056 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3401 Tpr-Chr6 36685971 36689747 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3401 - - ccaj:109795876 570.466