Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3396 ATGACGAGAATTAATCCGAATCGTGATCGCGCATCTAATTATAACTGCGGCAATGTCTTTAATTTGCTTGCACGGAGAGAGATTTCACCGAGGACGAAACATGTAGCAAGAGATGCAAAGCGTGGCCTCCTGTCATGGGTTGAGGCTGATTCACTGCGGCATTTGTCAGCTAAGTATTGCCCTTTATTACCTGCTCCAAGGTCTACTATTGCAGCAGCGTTTAGTCCAGATGGAAAAGTTCTTGCTTCCACGCATGGCGACCACACAGTAAAGATAATCGATTGTGAAACTGGACGTTGCTTAAAGGTGTTAATGGGCCATATGAGGACACCTTGGGTGGTTAGGTTCCATCCATTGCACCCGCAAATACTGGCCAGCGGGAGCTTGGATCAAGAAGTTCGATTATGGGATGCTAACACATCAGAGTGCATAACATCTCACCATTTCTATCGACCAATTGCATCCATTGCTTTTCATGCCAAAGGAGAAATAATTGCCGTTGCATCAGGCCACAAGCTTTACATATGGCACTATGACAAGAAAGGCGAAGCATCCTACTCGCCTATTTTTGTGTTAAAGACAAGGCGATCTCTACGGGCTGTGCATTTTCACCCTCATGCTGCGCCATATCTTTTAACTGCTGAGGTCAATGATCTTGACTGTTCAGATTCCTCAATGACAGAGGCAACATCTATTGGTTATTTACAATATCCCCCACCTTCCTTTTTTGTCGCAAATGTTCAACCTGCGGAGCATGTTACTTCGTCCAGTGAATCACCTAATGTGTCATTGCCTTTCTTCTTCGTTCCTTCATATACTGTTGATGAGTCTAGAGAAGAATTACCGCATGCTAGTCATGACATTGGCTCAGGTAGAATACAAATTGAGTCTTCTGCCATGGTTCAGTTTCAAACGAACACAAATGCAACAGAACAATATGATGCTACAGTGTCTCCCATGGATACAGTCTCTGAGATGGCCACTAACTCTCCTGCGCACACTACTTTCTCTAATGGAATGAGAGTTGGCATCCGGAACCTCACAGTGGATGGTATGGAGACTGATGAAACCAGACCTGCTGAAGGAAGTCAACACAGAAACCCTACTGATGCAAGTTCTCTCAATGTTATGTTACATGGCCCATCTAGACAAACTGCAAATCGTGGAGTTCATTCAGAGGGTGGCCAATTTCATCAGGTTGTTTCTTCAAGAGATCCAAGTGGATGGGAATTGCCTTTTCTACAAGGATATTTGATGGGTCAAAGCCAAGTTGGTATCCCTTCAATGCATTCTCACACGGGTGTTACTCGTGACACTCTACCTCAACAGGCTCAACAGATTAGTTCTTCTGTAACATCTAATAGTAATACTCTTTCCACTTCTAATGTTAATGTAGCAGTCCCATCTTCAGCAATGTCTGGAAGCATCAACATACCCGGATCTTCTATAAGATCAGGTTTTCGGAGTCATTTATCACAACCACATACACCTGTACCAGAATCTGGAAATCTTGCTGCTTCTATTAATACCCCACATGATGGATCTGACATCCAAACACTCATGAACCGAATTCAGTCAGAACTCGCTACATCCGTGGCTGCAGCGGCAGCTGCAGCTGCTGAGTTGCCTTGTACCGTGAAGTTAAGGGTATGGTCTCATGACATAAAAAATCCATGTGCCCCACTAAATGCTGAAAGATGTCGTCTAACAATACCTCATGCTGTCCTCTGCAGTGAAATGGGTGCCCACTTTTCACCATGCGGTAGATATTTAGCTGCCTGTGTTGCATGTATGCTTCCACATATTGAAGCTGATCCAGGATTACAAACTCCTGTACATCAAGAGTCCGGCATTGCAACATCACCAACTCGGCATCCAATATCAGCACACCAAGTTATGTATGAGCTGCGGATCTATTCTCTCGAGGAGGCAACATTTGGATTGGTGCTTGCTTCTCGAGCAATTAGAGCTGCTCATTGTCTGACTTCAATTCAGTTCTCACCTACATCTGAGCACATACTCCTTGCCTATGGTCGACGTCATTGTTCTCTTCTTAGATCCATTGTCATTGATGGAGAAGCAACATTACCTATATATACAGTTTTAGAGGTATATAGAGTTTCGGATATGGAACTTGTTAGGGTGCTTCCTAGTGCTGAAGATGAGGTCAATGTGGCATGCTTTCATCCTTTTCCTGGAGGCGGGTTAGTTTATGGAACAAAGGAAGGAAAGCTCAGGATCCTCCACTATGATGGTGCTCACCCAGTGAATGGCACTGGACCAAGTTACTTTCCTGAGGAGACGATCGTCGGAGTCAGTCAGTGA 2325 0.4447 MTRINPNRDRASNYNCGNVFNLLARREISPRTKHVARDAKRGLLSWVEADSLRHLSAKYCPLLPAPRSTIAAAFSPDGKVLASTHGDHTVKIIDCETGRCLKVLMGHMRTPWVVRFHPLHPQILASGSLDQEVRLWDANTSECITSHHFYRPIASIAFHAKGEIIAVASGHKLYIWHYDKKGEASYSPIFVLKTRRSLRAVHFHPHAAPYLLTAEVNDLDCSDSSMTEATSIGYLQYPPPSFFVANVQPAEHVTSSSESPNVSLPFFFVPSYTVDESREELPHASHDIGSGRIQIESSAMVQFQTNTNATEQYDATVSPMDTVSEMATNSPAHTTFSNGMRVGIRNLTVDGMETDETRPAEGSQHRNPTDASSLNVMLHGPSRQTANRGVHSEGGQFHQVVSSRDPSGWELPFLQGYLMGQSQVGIPSMHSHTGVTRDTLPQQAQQISSSVTSNSNTLSTSNVNVAVPSSAMSGSINIPGSSIRSGFRSHLSQPHTPVPESGNLAASINTPHDGSDIQTLMNRIQSELATSVAAAAAAAAELPCTVKLRVWSHDIKNPCAPLNAERCRLTIPHAVLCSEMGAHFSPCGRYLAACVACMLPHIEADPGLQTPVHQESGIATSPTRHPISAHQVMYELRIYSLEEATFGLVLASRAIRAAHCLTSIQFSPTSEHILLAYGRRHCSLLRSIVIDGEATLPIYTVLEVYRVSDMELVRVLPSAEDEVNVACFHPFPGGGLVYGTKEGKLRILHYDGAHPVNGTGPSYFPEETIVGVSQ* 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3396 774 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 63 751 IPR011047 -
Tpr6g3396 774 SMART WD40_4 56 94 IPR001680 GO:0005515
Tpr6g3396 774 SMART WD40_4 97 137 IPR001680 GO:0005515
Tpr6g3396 774 SMART WD40_4 709 749 IPR001680 GO:0005515
Tpr6g3396 774 SMART WD40_4 140 177 IPR001680 GO:0005515
Tpr6g3396 774 ProSitePatterns Trp-Asp (WD) repeats signature. 124 138 IPR019775 -
Tpr6g3396 774 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 104 142 - -
Tpr6g3396 774 ProSiteProfiles Trp-Asp (WD) repeats profile. 104 146 IPR001680 GO:0005515
Tpr6g3396 774 PANTHER ACTIVATING MOLECULE IN BECN1-REGULATED AUTOPHAGY PROTEIN 1 7 773 - -
Tpr6g3396 774 Gene3D - 41 226 IPR015943 GO:0005515
Tpr6g3396 774 Pfam WD domain, G-beta repeat 98 137 IPR001680 GO:0005515
Tpr6g3396 774 Pfam WD domain, G-beta repeat 71 94 IPR001680 GO:0005515
Tpr6g3396 774 PANTHER TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN 7 773 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3396 Tpr-Chr6 36652802 36659292 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3396 71 239 Miscellaneous Gene Families AT5G08390 24.176 7.95e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3396 - K17985 gmx:100817857 1242.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g3396 6 36652802 36659292 Tpr6g3396 6 36652802 36659292 ECH