Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3388 ATGGAGGAAGAAGGTGAAATATACGACGGCGTTAGAGCTGAATTCCCTCTTTCATTCGGTAAACAATCCAAATCTCAAACCCCTCTCGAAACCATTCACAACGCTACTCGCCGAACTTCTTCTTCTTCTGCTCTTCCCAATTCCAAAACCCCCAACGATTTTCCTTCCATTTCTTCTTCTTCCAAAGAATGGCTTCATTCCGTTCGTTCCTCCAAAAACCCTACCCCTCCACCTCCCCTCCACGACGACGACTCCCTCGTCGGACCTCCTCCACCGCCACCACATAATGAGGAGGAGGATGATGATGGCGAGATGATTGGCCCCCCTCCGCCACCACCTGGTTCCAATTTGGATGATTCCGATGACGAAGACGACGATTCGGATGAAGACCAACCGAGTAACCGCTTTCGTATTCCTCTTAGTAACGAGATTGTGCTCAAGGGACATACTAAGGTTGTGTCGGCTCTTGCTGTGGATCACACCGGTTCCAGAGTACTATCTGGAAGCTACGACTATATGGTTCGTATGTATGATTTTCAAGGGATGAATTCTCGTTTACAATCGTTTCGACAAATTGAGCCGTCTGAAGGGCATCAAATTCGCAATTTAAGCTGGAGTCCAACTGCCGATCGCTTTTTGTGTGTGACCGGATCAGCTCAAGCTAAGATTTATGATCGTGATGGCCTCACTCTGGGTGAGTTTGTAAAGGGAGACATGTATATTCGTGATTTAAAGAATACCAAGGGTCATATAACTGGATTGACATGTGGAGAGTGGCACCCAAAAACTAAGGAGACTATTTTAACATCATCAGAGGATGGGTCGCTCCGCATATGGGATGTAAATGACTTCACAACTCAAAAGCAGGTCATTAAACCAAAGCTCGCGAGACCTGGAAGAGTTCCTGTCACCACATGTGCATGGGATCATGATGGTAAATGCATTACTGGTGGTATAGGAGATGGTTCTATACAGATTTGGAGTATTAAACCCGGATGGGGGAGTAGGCCTGATATATATATTGAAAAATGTCATGAGGATGATATTACTAGTCTGAAATTTTCTTCTGATGGGAGAACCTTATTGTCAAGGAGCTCTGATGATTCATTGAAGGTTTGGGATCTGCGCAAAACAAAGGAAGCATTAAAGGTATTTGAAGAGTTGCCAAATCACTACGGACAAACAAATATTGGCTTCAGTCCTGATGAGCAACTATTTTTTACTGGAACATCTGTAGAAAGGGATAGCGCAACAGGAGGTTTATTGTGCTTCTTTGATAGACTAAATCTTGAGCTTGTTTCAAAAGTTGGCATATCACCCACTTGCAGTGTTGTTCAGTGTTCTTGGCATCCTAAACTGAATCAGATCTTTGCAACTGTTGGTGATAAAAGCCAAGGAGGGACTCACATACTATATGATCCAACCATCAGTGAGAGAGGAGCTCTTGTTTGTGTTGCACGTGCACCAAGGAAAAAATCAATGGATGACTTTGAGGCAAATCCTGTCATTCACAATCCTCATGCTTTACCTCTATTTAGAGATCAGCCAAGCCGCAAGCGTCAGCGAGAGAAGGTATTAAAGGATCCATTGAAGTCCCATAAGCCTGAACTACCTATGACAGGACCTGGCTTTGGCGGACGAGTTGGTACAAGTCAAGGAAGCTTACTGACCCAATATCTTCTAAAGAAAGGTGGTATGATTAAGGAGACATGGATGGATGAAGATCCAAGGGAAGCTATCCTAAAATATGCTGATGTTGCAGCTAAAGAACCAAAGTTTATAGCTCCAGCATATGCCGAAACTCAACCCGAGCCATTGTTTGCAAAGTCAGATTCTGAGGATGAAGAGAAATGA 1854 0.4407 MEEEGEIYDGVRAEFPLSFGKQSKSQTPLETIHNATRRTSSSSALPNSKTPNDFPSISSSSKEWLHSVRSSKNPTPPPPLHDDDSLVGPPPPPPHNEEEDDDGEMIGPPPPPPGSNLDDSDDEDDDSDEDQPSNRFRIPLSNEIVLKGHTKVVSALAVDHTGSRVLSGSYDYMVRMYDFQGMNSRLQSFRQIEPSEGHQIRNLSWSPTADRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHITGLTCGEWHPKTKETILTSSEDGSLRIWDVNDFTTQKQVIKPKLARPGRVPVTTCAWDHDGKCITGGIGDGSIQIWSIKPGWGSRPDIYIEKCHEDDITSLKFSSDGRTLLSRSSDDSLKVWDLRKTKEALKVFEELPNHYGQTNIGFSPDEQLFFTGTSVERDSATGGLLCFFDRLNLELVSKVGISPTCSVVQCSWHPKLNQIFATVGDKSQGGTHILYDPTISERGALVCVARAPRKKSMDDFEANPVIHNPHALPLFRDQPSRKRQREKVLKDPLKSHKPELPMTGPGFGGRVGTSQGSLLTQYLLKKGGMIKETWMDEDPREAILKYADVAAKEPKFIAPAYAETQPEPLFAKSDSEDEEK* 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3388 617 MobiDBLite consensus disorder prediction 72 88 - -
Tpr6g3388 617 MobiDBLite consensus disorder prediction 515 534 - -
Tpr6g3388 617 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 342 376 - -
Tpr6g3388 617 PRINTS G protein beta WD-40 repeat signature 267 281 IPR020472 -
Tpr6g3388 617 PRINTS G protein beta WD-40 repeat signature 315 329 IPR020472 -
Tpr6g3388 617 PRINTS G protein beta WD-40 repeat signature 361 375 IPR020472 -
Tpr6g3388 617 MobiDBLite consensus disorder prediction 19 71 - -
Tpr6g3388 617 Gene3D - 235 476 IPR015943 GO:0005515
Tpr6g3388 617 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 146 180 - -
Tpr6g3388 617 Pfam WD domain, G-beta repeat 144 178 IPR001680 GO:0005515
Tpr6g3388 617 Pfam WD domain, G-beta repeat 302 328 IPR001680 GO:0005515
Tpr6g3388 617 Pfam WD domain, G-beta repeat 245 280 IPR001680 GO:0005515
Tpr6g3388 617 Pfam WD domain, G-beta repeat 343 374 IPR001680 GO:0005515
Tpr6g3388 617 ProSitePatterns Trp-Asp (WD) repeats signature. 267 281 IPR019775 -
Tpr6g3388 617 ProSiteProfiles Trp-Asp (WD) repeats profile. 146 187 IPR001680 GO:0005515
Tpr6g3388 617 MobiDBLite consensus disorder prediction 1 88 - -
Tpr6g3388 617 ProSiteProfiles Trp-Asp (WD) repeats profile. 247 289 IPR001680 GO:0005515
Tpr6g3388 617 ProSiteProfiles Trp-Asp (WD) repeats profile. 342 383 IPR001680 GO:0005515
Tpr6g3388 617 SUPERFAMILY WD40 repeat-like 111 462 IPR036322 GO:0005515
Tpr6g3388 617 MobiDBLite consensus disorder prediction 595 617 - -
Tpr6g3388 617 Gene3D - 92 234 IPR015943 GO:0005515
Tpr6g3388 617 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 247 282 - -
Tpr6g3388 617 MobiDBLite consensus disorder prediction 115 137 - -
Tpr6g3388 617 SMART WD40_4 185 225 IPR001680 GO:0005515
Tpr6g3388 617 SMART WD40_4 139 178 IPR001680 GO:0005515
Tpr6g3388 617 SMART WD40_4 335 374 IPR001680 GO:0005515
Tpr6g3388 617 SMART WD40_4 237 280 IPR001680 GO:0005515
Tpr6g3388 617 SMART WD40_4 286 328 IPR001680 GO:0005515
Tpr6g3388 617 MobiDBLite consensus disorder prediction 515 541 - -
Tpr6g3388 617 PANTHER GASTRULATION DEFECTIVE PROTEIN 1-RELATED 2 617 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3388 Tpr-Chr6 36551729 36555806 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3388 267 447 Miscellaneous Gene Families AT5G08390 24.725 3.86e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3388 K24752 - gmx:100815380 1048.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g3388 6 36551729 36555806 Tpr6g3388 6 36551729 36555806 ECH