Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3379 ATGATGGAGGGTGGAAGTAGTTTTAGGATTGGTAGTTCATCAATTTGGAGGAACACTGATGCTGCTGAGATATTTTCAGATTCTTTTCACCAAGAAGATGATGAAGAAGCTCTTAAATGGGCTGCAATTCAGAATCTTCCTACTTTTGCGCGTTTGAGGAAAGGTTTGCTCACTTCACTTCAAGGTGAAGCTACTGAGATTGATATCGAGAACCTTGGGTTGCAAGAAAGAAAAGATTTGCTTGAAAGACTTGTTAGACTTGCTGAAGAGGATAATGAGAAGTTTTTGCTCAAACTCAAAAAACGAATCGACAGAGTTGGAATTGATCTTCCTACGATAGAGGTTCGATTCGAGCACTTGAATATCGAAGCCGAAGCTCATGTAGGAAGCAGATCTTTGCCTACCTTTACTAACTTCATGGTCAATATAGTAGAGGTCCTATTGAACTCTCTGCATGTACTTCCAAGTAGAAAACAACATTTAAATATTCTCAGGAATGTTAGTGGAATAATAAAGCCTTCAAGAATGACATTGCTTTTGGGCCCTCCAAGTTCTGGAAAAACCACACTCCTGTTGGCCTTGGCTGGAAAACTTGATCCAAAATTGAAGTTTTATGGAAAGGTGACTTATAATGGTCATGAGATGAATGAGTTTGTGCCTCAAAGAACTGCTGCTTATGTGGATCAGCATGATCTTCACATAGGAGAAATGACTGTTAGAGAAACTTTGGCCTTCTCAGCAAGAGTCCAAGGAGTCGGGCCTCGTTATGACTTGCTAGCCGAATTGTCCAGAAGAGAAAAAGATGCAAATATCAAACCTGATCCAGATATTGATGTGTACATGAAGGCTATAGCAACTGAAGGCCAGAAGACAAATTTGATTACAGATTATGTCCTAAGGGTTTTGGGACTAGAGGTTTGTGCTGATACTTTTGTAGGAAATGCAATGTTAAGAGGTATCTCTGGTGGACAAAGGAAACGAGTTACAACAGGGGAGATGCTGGTTGGACCAACTAAAGTTCTATTCATGGATGAAATATCTACTGGTTTGGATAGCTCAACAACTTTTCAAATTGTGAACTCAATGAAGCATTATGTCCACATTCTCAAAGGCACCACGGTTATCTCACTCCTGCAGCCACCGCCAGAGACTTACAATCTTTTTGATGACGTTATTCTACTCTCTGATAGTCACATTATATACCAGGGTCCCCGCGAACACGTGCTTGAATTTTTCGAATCAATGGGTTTTAAATGTCCTAACAGGAAAGGAGTGGCAGATTTTTTGCAAGAAGTGACATCAAGGAAAGATCAAGAGCAATACTGGGAACACAAGGATCAGCCTTATAGATTTGTCACAGCTGAAGAGTTTTCTGAGGCATTTCAATCATTTCATGTTGGCATAAGACTTGGTGATGAACTTGGTACTGAATTTGACAAGTCTCAGAGCCATCCATCTTCCTTGACAACCAAGAAATATGGAGTAGGAAAATGGGAACTGTATAAAGCTTGCTCATCAAGAGAATTTTTACTTATGAAGCGCAATTCATTTGTCTACATTTTCAAGCTTTGCCAACTGTTTATAATGGCAATGGTTGCGATGACCATCTTCTTCCGGACTGAGATGCACAGAGATTCTGTGACGCATGGAGGCATATATGTAGGTGCATTGTTCTATGCTGTTGTTGTGATAATGTTCAATGGAATGGCTGAAATTTCCATGGTAGTTTCAAGGCTTCCTGTTTTCTACAAGCAAAGGGGATACCTCTTTTACCCTCCATGGGCATTTGCTCTTCCTTCATGGATCCTAAAAATCCCTTTAACTTTTGTGGAAGTGTTTGTTTGGGTATTCCTCACCTATTATGTCATTGGTTTTGATCCCAATATTGGAAGATTTTTCAGACAATACCTTATTCTTGTACTAGTACACCAGATGGCTTCTGCATTATTCAGACTCATTGCAGCAGTTGGGAGGGATATGAATGTAGCTCTCACATTTGGATCATTTGTACTTTCCGTCCTTTTTGCTATGAGTGGTTTTGTCCTATCAAAAGACGGTATAAAAAAATTGTGGATATGGGGATTTTGGATATCACCTATGATGTATGCACAAAATGCCATGGTAAATAATGAGTTCCTTGGGAATAAATGGAAACATGTTCTTCCTAACTCAACGGAGCCACTAGGAGTTGAAGTTTTGAAATCTCGCGGGTACTTCACCGAGTCATACTGGTACTGGATTGGTGTGGGTGCTTTGATTGGATATACATTAGTTTTCAACTTTGGCTATATCCTTGCTCTCACTTTCTTGAATTCACTTGGAAAGCATCAAACTGTTATCCCGGAGGAATCTCAAAACTATGAGCAAAATGGTGGTAGCAGAAAAACTGTCTCTCCTGTTACTTTATCGGTGCAGGAAACAATTGCCGCAGATACAAATCATAGTAGGAAAAGAGGAATGGTTCTTCCTTTTGAACCACATTCAATCACCTTTGATGAAGTTACGTATTCAGTAGGCATGCCACAGGAAATGCGTAACCGGGGTGTTGTTGAGGATAAGTTAGTTCTTTTGAAGGGTGTCAGTGGAGCTTTCAGACCAGGTGTTCTCACTGCTCTGATGGGTGTGACTGGTGCTGGAAAAACAACTCTGATGGATGTTCTTTCTGGTAGAAAAACTGGTGGAGATATCGGTGGGAATGTTACAATTTCTGGATATCCAAAGAAGCAAGAAACCTTTGCAAGGATTTCTGGATATTGTGAGCAAAATGATATCCACTCTCCTCATGTTACTATCTATGAGTCGTTGCTCTATTCAGCATGGCTCCGATTGTCCCTCGACATCAATGCTGAAACCCGGAAGATGTTCATTGAGGAAGTTATGGAACTTGTAGAATTGAAACCGCTACGAAACGCATTAGTAGGACTGCCTGGTGTTAGCGGTCTCTCAACAGAGCAGCGCAAAAGGTTGACTATTGCAGTTGAGTTGGTAGCCAATCCGTCTATAATATTCATGGATGAGCCAACTTCTGGGCTAGATGCAAGGGCTGCAGCTATTGTGATGAGAACAGTTAGGAACACAGTAGACACTGGAAGAACGGTTGTATGTACCATCCACCAGCCTAGTATTGATATATTTGAATCTTTTGATGAGCTTTTGCTACTTAAGCAAGGAGGGAAAGAGATTTATGTGGGGCCACTTGGACATCATTCTTCCAATTTAATATGTTATTTTGAAGGAATTCAAGGTGTCTGCAAAATTAAAGACGGTTATAATCCAGCAACATGGATGTTGGATGTCACAACTTCATCTAAAGAAGTGGAACTGGGGATTGATTTTGCAGAAGTGTACAAAAATTCAGAGTTATACAGGATAAACAAAGCACTTATCAAAGAATTGAGTACTCCAGCTTCTGGTTCGAAAGATCTTTATTTTCATTCACAGTACTCAAGATCCTTTTTGACACAATGCATGGCTTGCTTATGGAAACAACATTGGTCTTATTGGCGCAATCCTGTACATACCGCCGTAAGATTTTTGTATTCAACCATCGTAGCTGTTTTGCTTGGAACGATGTTTTGGAACCTTGGCTCCAAAATTGAAAAGGAACAAGATCTTTTTAATGCTATGGGGTCCATGTATGCTGCTGTTCTCCTAATTGGCTTCAAGAATGCTAATTCAGTGCAGCCAGTGGTTGCGGTTGAAAGAACGGTCTTTTATAGAGAAAGAGCTGCCGGAATGTATTCAGCCTTTCCATATGCTTTTGCTCAGGTTGTTATTGAGCTCCCACATGTTCTTGTACAATCTGTGGTCTATTGCTTTATAGTTTATGCTATGATTGGTTTTGAGTGGACTGTGGTTAAAGTTTTATGGTACCTATTCTTCATGTTTTTCACCTTCCTCTTCTTCACCTACTACGGTATGATGTCAGTGGCCATGACCCCAAACAGCCACATTTCCGCTATAGTTTCCTCTGCATTCTTTTCCGTATGGAATCTCTTCTCAGGATTCATAGTCCCAAGACCAAGGATTCCAGTGTGGTGGAGGTGGTACAGTTGGATAAATCCAATGGCTTGGAGTTTGTATGGATTGGTGGCTTCACAATATGGAGATATAAAACACAACATTGATACCAGTGATGGAATACAGACAGTGGAAGGTTTTCTTAGAAATTACTTTGGTTTCAAGCATGATTTTCTAGGAGTGGTTGGTGTTGTTAATGTTGCATTTCCAATAGCTTTTGCTTTGGTCTTTGCCGTATCAATCAAGATGTTCAATTTCCAAAGGCGTTAA 4290 0.403 MMEGGSSFRIGSSSIWRNTDAAEIFSDSFHQEDDEEALKWAAIQNLPTFARLRKGLLTSLQGEATEIDIENLGLQERKDLLERLVRLAEEDNEKFLLKLKKRIDRVGIDLPTIEVRFEHLNIEAEAHVGSRSLPTFTNFMVNIVEVLLNSLHVLPSRKQHLNILRNVSGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPKLKFYGKVTYNGHEMNEFVPQRTAAYVDQHDLHIGEMTVRETLAFSARVQGVGPRYDLLAELSRREKDANIKPDPDIDVYMKAIATEGQKTNLITDYVLRVLGLEVCADTFVGNAMLRGISGGQRKRVTTGEMLVGPTKVLFMDEISTGLDSSTTFQIVNSMKHYVHILKGTTVISLLQPPPETYNLFDDVILLSDSHIIYQGPREHVLEFFESMGFKCPNRKGVADFLQEVTSRKDQEQYWEHKDQPYRFVTAEEFSEAFQSFHVGIRLGDELGTEFDKSQSHPSSLTTKKYGVGKWELYKACSSREFLLMKRNSFVYIFKLCQLFIMAMVAMTIFFRTEMHRDSVTHGGIYVGALFYAVVVIMFNGMAEISMVVSRLPVFYKQRGYLFYPPWAFALPSWILKIPLTFVEVFVWVFLTYYVIGFDPNIGRFFRQYLILVLVHQMASALFRLIAAVGRDMNVALTFGSFVLSVLFAMSGFVLSKDGIKKLWIWGFWISPMMYAQNAMVNNEFLGNKWKHVLPNSTEPLGVEVLKSRGYFTESYWYWIGVGALIGYTLVFNFGYILALTFLNSLGKHQTVIPEESQNYEQNGGSRKTVSPVTLSVQETIAADTNHSRKRGMVLPFEPHSITFDEVTYSVGMPQEMRNRGVVEDKLVLLKGVSGAFRPGVLTALMGVTGAGKTTLMDVLSGRKTGGDIGGNVTISGYPKKQETFARISGYCEQNDIHSPHVTIYESLLYSAWLRLSLDINAETRKMFIEEVMELVELKPLRNALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELLLLKQGGKEIYVGPLGHHSSNLICYFEGIQGVCKIKDGYNPATWMLDVTTSSKEVELGIDFAEVYKNSELYRINKALIKELSTPASGSKDLYFHSQYSRSFLTQCMACLWKQHWSYWRNPVHTAVRFLYSTIVAVLLGTMFWNLGSKIEKEQDLFNAMGSMYAAVLLIGFKNANSVQPVVAVERTVFYRERAAGMYSAFPYAFAQVVIELPHVLVQSVVYCFIVYAMIGFEWTVVKVLWYLFFMFFTFLFFTYYGMMSVAMTPNSHISAIVSSAFFSVWNLFSGFIVPRPRIPVWWRWYSWINPMAWSLYGLVASQYGDIKHNIDTSDGIQTVEGFLRNYFGFKHDFLGVVGVVNVAFPIAFALVFAVSIKMFNFQRR* 1430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3379 1429 Gene3D - 149 459 IPR027417 -
Tpr6g3379 1429 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 829 1082 IPR003439 GO:0005524
Tpr6g3379 1429 Pfam Plant PDR ABC transporter associated 717 780 IPR013581 -
Tpr6g3379 1429 CDD ABCG_PDR_domain1 155 403 IPR034001 -
Tpr6g3379 1429 SMART AAA_5 866 1058 IPR003593 -
Tpr6g3379 1429 SMART AAA_5 173 405 IPR003593 -
Tpr6g3379 1429 Pfam ABC-transporter N-terminal 88 139 IPR029481 -
Tpr6g3379 1429 CDD ABCG_PDR_domain2 826 1064 IPR034003 -
Tpr6g3379 1429 Gene3D - 830 1071 IPR027417 -
Tpr6g3379 1429 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 844 1066 IPR027417 -
Tpr6g3379 1429 Coils Coil 71 91 - -
Tpr6g3379 1429 PANTHER ATP-BINDING CASSETTE TRANSPORTER 2 1429 - -
Tpr6g3379 1429 PANTHER DRUG RESISTANCE TRANSPORTER-LIKE ABC DOMAIN PROTEIN 2 1429 - -
Tpr6g3379 1429 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 160 421 IPR027417 -
Tpr6g3379 1429 Pfam ABC-2 type transporter 1038 1101 IPR043926 GO:0140359
Tpr6g3379 1429 Pfam ABC-2 type transporter 379 457 IPR043926 GO:0140359
Tpr6g3379 1429 Pfam ABC-2 type transporter 1154 1368 IPR013525 GO:0016020|GO:0140359
Tpr6g3379 1429 Pfam ABC-2 type transporter 500 712 IPR013525 GO:0016020|GO:0140359
Tpr6g3379 1429 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 148 421 IPR003439 GO:0005524
Tpr6g3379 1429 Pfam ABC transporter 164 346 IPR003439 GO:0005524
Tpr6g3379 1429 Pfam ABC transporter 857 1009 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3379 Tpr-Chr6 36443385 36451680 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3379 K08711 - gmx:732607 2432.91