Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3361 ATGGCGTCTTCGTATCCTGGTTCCGTTAGTGCCGCTCAGGTTGGTTCTTACTTCGTTGGACAGTACTATCAAGTTCTTCGTCAACAACCTGATCTTGTTCATCAGTTTTACTCTGATTCCAGCTCCATGATTCGTGTTGATGGTGATTATTCTGAGACTGCATCTGATGTGTTGCATATTCATAATATTGTGACATCACTGAATTTTTCGACAATTGAGATCAAGACGATCAATTCTCTTGACTCTTGGGATGGAGGAGTGATTGTGATGGTTACGGGTGTTGTTAAGATCAAGGATGTGAACAGGAAGCAGAAGTTTGTTCAGACTTTCTTCCTTGCCCCTCAGGAGAAGGGTTATTTTGTGCTCAATGATATATTTCAATTTGTTCATGAGGAAGTAGTGCATCCAAATCTGGTACCGGTGACCTCTGAAAAGATTGACTCACAGCCACATGTGTCTGCTTCTTTTGCTGAGCCACCAGCTTCAGACTATGGTTTTGAGGAAGAAGCAAGGGAATATGTCAACTCAGTTCATATAGACGATGATCCGGTGGACAAGTATAGTCTTCCTGAGCAGCATCAGCAGCTACAAGAAGATTTCGAATCTGAAGTTGTGGTGGAGGAAACTCCTGCACAGGAGGCATCTCCACAGGTGTATAGTGTTGCACAAACTATCCGTGAAACCCCTGTTGCTCATGTGGAAGAGTCGTATGAGGAGCCTGCTAAGAAAACTTATGCATCTATTTTACGTGTCGCCAAAGGCCAATCAGTGGTGTCCGCTGCACCACAACATGCTCCACAGCATTCTTTTAAAAGTGCTCCTCCTCCTTCCGATTTTAATCATGTCACACAGCCTGCTGTTCAGCAGTCAGTGGTGCAGCCTGCGTTTCAGCAGTCAAGATCAGCATCTACATATGTTTCAGAGTCTGGGGCTGAGGCAACAGAAGAAAGCTACAAATTTGAAGAAGAAGAAGTAACATCTGTCTATGTGAGAAACCTGCCTGGTGATATTACCGAAGCGGAGATTGAGGAGGAGTTCAAGAATTTCGGCAGAATTAAGCCAGATGGAATATTTGTAAGGGTCCGACAGGAAATTGGAGTTTGCTATGCATTTGTTGAATTCGAAGACGTTGTTGGAGTTCAAAATGCACTTCAGGCTTCTCCCATACAATTGGCTGGTAGACAAATATACATAGAGGAGCGAAGACCAAGCAGCGGCGGTGCAGCTCGAGGAGGAAGAGGAAGGGGAAGAGGCAGAGGCGGTTATCCAACAGATGCTCCAAGAGGGCGTTTTGGTGGCAGGAGCTCGGGAAGGGGTTATTATCAGGATACCTCAGACTATACCAGGAGCTCGGGAAGAGGTGATGGTTATCTTCAGCGCGGTTCACGATAG 1392 0.4555 MASSYPGSVSAAQVGSYFVGQYYQVLRQQPDLVHQFYSDSSSMIRVDGDYSETASDVLHIHNIVTSLNFSTIEIKTINSLDSWDGGVIVMVTGVVKIKDVNRKQKFVQTFFLAPQEKGYFVLNDIFQFVHEEVVHPNLVPVTSEKIDSQPHVSASFAEPPASDYGFEEEAREYVNSVHIDDDPVDKYSLPEQHQQLQEDFESEVVVEETPAQEASPQVYSVAQTIRETPVAHVEESYEEPAKKTYASILRVAKGQSVVSAAPQHAPQHSFKSAPPPSDFNHVTQPAVQQSVVQPAFQQSRSASTYVSESGAEATEESYKFEEEEVTSVYVRNLPGDITEAEIEEEFKNFGRIKPDGIFVRVRQEIGVCYAFVEFEDVVGVQNALQASPIQLAGRQIYIEERRPSSGGAARGGRGRGRGRGGYPTDAPRGRFGGRSSGRGYYQDTSDYTRSSGRGDGYLQRGSR* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3361 463 SMART rrm1_1 327 399 IPR000504 GO:0003723
Tpr6g3361 463 ProSiteProfiles Nuclear transport factor 2 domain profile. 14 128 IPR018222 -
Tpr6g3361 463 Pfam Nuclear transport factor 2 (NTF2) domain 14 128 IPR002075 -
Tpr6g3361 463 Gene3D - 5 133 - -
Tpr6g3361 463 MobiDBLite consensus disorder prediction 402 463 - -
Tpr6g3361 463 CDD NTF2 10 129 IPR018222 -
Tpr6g3361 463 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 326 403 IPR000504 GO:0003723
Tpr6g3361 463 MobiDBLite consensus disorder prediction 438 457 - -
Tpr6g3361 463 CDD RRM_SF 328 399 - -
Tpr6g3361 463 SUPERFAMILY NTF2-like 10 131 IPR032710 -
Tpr6g3361 463 PANTHER GB|AAD20086.1 9 454 - -
Tpr6g3361 463 SUPERFAMILY RNA-binding domain, RBD 320 433 IPR035979 GO:0003676
Tpr6g3361 463 Gene3D - 297 459 IPR012677 -
Tpr6g3361 463 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 9 454 IPR039539 -
Tpr6g3361 463 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 328 396 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3361 Tpr-Chr6 36268784 36273636 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3361 - - cam:101501784 740.725
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g3361 6 36268784 36273636 Tpr6g3361 6 36268784 36273636 ECH