Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3318 ATGTATCTTCAATTTTACATCAACGATAACGGTGACAAGGTTTACACTACTAAGAAAGAGTCACCAGTTGGGTTGGCTACTCAATCTGCTCATCCAGCTCGGTTTTCACCTGATGACAAGTTTTCAAGGCAGAGAATTCTTCTGAAGAAGCGATTTGGACTGTTACCAACCCAACATCCAGCTCCAAAATACTGA 195 0.4154 MYLQFYINDNGDKVYTTKKESPVGLATQSAHPARFSPDDKFSRQRILLKKRFGLLPTQHPAPKY* 65
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3318 64 Pfam Nucleolar RNA-binding protein, Nop10p family 3 52 IPR007264 GO:0001522|GO:0030515|GO:0042254
Tpr6g3318 64 PANTHER RIBOSOME BIOGENESIS PROTEIN NOP10 1 64 IPR007264 GO:0001522|GO:0030515|GO:0042254
Tpr6g3318 64 PANTHER NUCLEOLAR RNA-BINDING NOP10P-LIKE PROTEIN 1 64 - -
Tpr6g3318 64 SUPERFAMILY Nop10-like SnoRNP 3 58 IPR036756 GO:0001522|GO:0030515|GO:0042254
Tpr6g3318 64 Gene3D H/ACA ribonucleoprotein complex, subunit Nop10 10 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3318 Tpr-Chr6 35807957 35809666 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3318 K11130 - aof:109827796 129.798