Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3316 ATGGGCGACGATCATGAATGGCAGACTGTCAACAGGAATAGAAGATCGAAACAACATCCCAAAACTGATATAGCAACACTATCAAGGAATGGCAAACTAAATAATGCAAATCTAATTTCTTATTTCTTCACTGAAATTCCAGATAGTTTTAATGCAAAGGCGATGCTCAATATTTTTCAAAAGTATGGAAGCATTATTGAAGTAGTGATACCGGCGAAAAGAGACAAAGGTGGGAGAAGATTTGGTTTTGCTCGCTTTGAAAACGTAAGAGATACCCGTCTATTTGGAGTGAAATTGGATAATATTATTATTGGCAGAGATAAAATAAGGGTGAATCTTTCAAGATTTGAAAGAAAATTTGAATCTCCAAGGCGTGTACAAAGAAATGAGGGCACGCTAAAACAAGCCAATGATAATGGAAAATTCAATGACAATCACAGGAAGGATGATGTAGGTAACCGCTCTTATGCTAATGTAGCGCGTTATGATGGGGCAGATAGACAACAAGAAGGCAATAATCAGGTCTCTTTGTCTTATGTTTCGGACAAGAAAGATTTGCAGCAGTTAAAGAAATCGTTTGTTGGGGAAATAGTGAACCCGGGAACGACTTATAATATTCAAGAAGTGTTCCATATGCAGGGGTATTTCGGAGTTAAGATTACTCCTTTAGGAGCAAACCTGGCTCTCCTAGAAGGCCAAGAAGAGGGGGAGGTGCAGGCACTCATGGAAGATGCCAGAGAATGGATGGAACAATGGTTCAAGGAGGTGCGGCCTTGGAATGCTAAGGAGATTGATCTGGAAAGATTAGTTTGGTTGCGAGTTTATGGCATTCTGGCACATGCGTGGAATGATGCTTTCTTCACCTTGATCTCAAAACCATGGGGGCATTTTATCAATGCTGATGACGGCACGAATAAAAAAATATCAATGGATGTGGCGCGACTTTTGATTCGCACTTCTGGGCAAAGGGTGGTGGACGAATTCATTGATGTGAAGATAGACGGAGACATCTTTCATATCCGTGTTATCGAAGATTCGTATGGTCCGATGAGAATTATGGTGCACCAACCGAATAGTCGTGAAGGCAGAGACGAAGACAGCGATAGCTCAGAGGAAGAAGAATGA 1125 0.4107 MGDDHEWQTVNRNRRSKQHPKTDIATLSRNGKLNNANLISYFFTEIPDSFNAKAMLNIFQKYGSIIEVVIPAKRDKGGRRFGFARFENVRDTRLFGVKLDNIIIGRDKIRVNLSRFERKFESPRRVQRNEGTLKQANDNGKFNDNHRKDDVGNRSYANVARYDGADRQQEGNNQVSLSYVSDKKDLQQLKKSFVGEIVNPGTTYNIQEVFHMQGYFGVKITPLGANLALLEGQEEGEVQALMEDAREWMEQWFKEVRPWNAKEIDLERLVWLRVYGILAHAWNDAFFTLISKPWGHFINADDGTNKKISMDVARLLIRTSGQRVVDEFIDVKIDGDIFHIRVIEDSYGPMRIMVHQPNSREGRDEDSDSSEEEE* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3316 374 Pfam Domain of unknown function (DUF4283) 214 317 IPR025558 -
Tpr6g3316 374 SMART rrm1_1 40 112 IPR000504 GO:0003723
Tpr6g3316 374 MobiDBLite consensus disorder prediction 124 150 - -
Tpr6g3316 374 Gene3D - 32 122 IPR012677 -
Tpr6g3316 374 SUPERFAMILY RNA-binding domain, RBD 44 136 IPR035979 GO:0003676
Tpr6g3316 374 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 46 109 IPR000504 GO:0003723
Tpr6g3316 374 CDD RRM_SF 42 112 - -
Tpr6g3316 374 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 39 371 - -
Tpr6g3316 374 MobiDBLite consensus disorder prediction 1 22 - -
Tpr6g3316 374 MobiDBLite consensus disorder prediction 355 374 - -
Tpr6g3316 374 PANTHER RNA RECOGNITION MOTIF 39 371 - -
Tpr6g3316 374 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 39 116 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3316 Tpr-Chr6 35728465 35729589 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3316 - - gmx:102663792 233.802