Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3308 ATGGACAAATCCAAGCTAGCACTATTCGGCGAGAGGCTCAAAACCAGTAGCGCCAACATGAGTCGAATCGTAAGCGGAAAAATGAAGGAAATACTCCAAACACCGACGCCGGAATCAAAGATGGTCGACGAAGCAACATCGGAAACATTAGAGGAACCAAATTGGGGAATGAATCTGAGAATCTGTGGCCTTATTAATGCTGATGAGTTTAATGGTTCAGAAGTGGTGAAAACTATTAAGAGAAAGATTAATCATAAGAGTCATGTTGTTCAGAAACATAGTCTTGATTTGTTGGAAACTTGTGCTATGAATTGTGAAAAAGTATTTTCTGAAATTGCTTCTGAGAAGCTTTTAGATGATATGGTTAGGTTGATTGAGAATAATCAAGCTGATCAGGAAAATAGAAGAAGGGCTTTTCAGTTGATTAGGGCTTGGGGTGAGTCTGAGGATATTGCTTATCTTCCTGTTTTCAGTCAAACTTATATGAGTTTGAAAGGAAGGGGTGAAACACTTGACACGGCGGGAGGAAATTCACCACCTATTCCATATGCCTCAGAGTCACATACTTTAGATCCCCCCGAAAGATACCCAGTTCCAGAAGCAGGGCTACACGCTCTTTCTCTGGATGAATCGGCAGCCTTCTTTACAGATCATCAACCAGCATCAGTTGAAGAGAAGAAAGAGCATCTCGTGGTTGCTCGAAATAGTCTTGAATTGCTCTCTAGCATATTAAATTCTGAAGCAGAGCCAAAACCTTTGAAGGAAGATATAACTTTGACTCTGCTGGATAAGTGCAAGCAATCTCTCTCTGTTATCAAGGAGATTGTGGAAAGTACCACAAATGATGAAGAGACACTTTTTGAGGCTTTATATCTCAATGATGAGCTGCAACAGTTGGTTTCTAAGTATGAGGAGCTGGAAGCTTCTCAAAGGCCAGGTGTACAACAAACGCCAAATGCTGACACTGCCAAGCATGACGCTGGAGCTGTTCAAAATCCCAATGAAAGATTTGAAGATGATGAATCTGAAGAGACAGAAGCTGCTCAGGATCTTGATCGTAAGCTGCCCCAAAAGTCAAACACTCCTGAAGTTAGTGTCAATGCAACTGAGGTGGATGGTCATGTTGAAACCAAAATAGTGGATAGCACAAAAGTGGATGGTCATGTTGAAACCAAAATAGTGGATAACACAAAAGAGAAGAATGGAGAACCAAGCCTCAAGAGTAATACTGAATGA 1236 0.4118 MDKSKLALFGERLKTSSANMSRIVSGKMKEILQTPTPESKMVDEATSETLEEPNWGMNLRICGLINADEFNGSEVVKTIKRKINHKSHVVQKHSLDLLETCAMNCEKVFSEIASEKLLDDMVRLIENNQADQENRRRAFQLIRAWGESEDIAYLPVFSQTYMSLKGRGETLDTAGGNSPPIPYASESHTLDPPERYPVPEAGLHALSLDESAAFFTDHQPASVEEKKEHLVVARNSLELLSSILNSEAEPKPLKEDITLTLLDKCKQSLSVIKEIVESTTNDEETLFEALYLNDELQQLVSKYEELEASQRPGVQQTPNADTAKHDAGAVQNPNERFEDDESEETEAAQDLDRKLPQKSNTPEVSVNATEVDGHVETKIVDSTKVDGHVETKIVDNTKEKNGEPSLKSNTE* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3308 411 MobiDBLite consensus disorder prediction 374 405 - -
Tpr6g3308 411 ProSiteProfiles VHS domain profile. 45 172 IPR002014 GO:0035091|GO:0043130
Tpr6g3308 411 SUPERFAMILY ENTH/VHS domain 34 168 IPR008942 -
Tpr6g3308 411 SMART VHS_2 38 168 IPR002014 GO:0035091|GO:0043130
Tpr6g3308 411 Coils Coil 334 354 - -
Tpr6g3308 411 Gene3D - 210 311 IPR038425 -
Tpr6g3308 411 CDD VHS 39 165 - -
Tpr6g3308 411 Gene3D - 28 182 IPR008942 -
Tpr6g3308 411 ProSiteProfiles GAT domain profile. 183 308 IPR004152 GO:0035091|GO:0043130
Tpr6g3308 411 SUPERFAMILY GAT-like domain 192 307 - -
Tpr6g3308 411 Coils Coil 289 309 - -
Tpr6g3308 411 Pfam GAT domain 234 307 IPR004152 GO:0035091|GO:0043130
Tpr6g3308 411 MobiDBLite consensus disorder prediction 307 411 - -
Tpr6g3308 411 Pfam VHS domain 38 148 IPR002014 GO:0035091|GO:0043130
Tpr6g3308 411 PANTHER TOM1-LIKE PROTEIN 1 1 374 IPR044836 GO:0035091|GO:0043130|GO:0043328
Tpr6g3308 411 PANTHER TOM1-LIKE PROTEIN 2 1 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3308 Tpr-Chr6 35653568 35658099 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3308 - - mtr:MTR_7g097010 616.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g3308 6 35653568 35658099 Tpr6g3308 6 35653568 35658099 ECH