Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2880 ATGGCTTGGATTTTTAGCTTACCTTCTCTTATTACAAAACACAAAAAGATTACACCTTTTGAAATACACACTTGCTTAATCCTAAAGTTTATTAAACATTTTTGTTCTTCACCAGTTTATCAACCTCATGAACTTGACCATTGTATCAAATCAAATTCTTTTTATGAATCTCTTATTGATAATTCTACCCACATTACACATCTTTATCAAATACATGACAAGTTAATTGTCTCTGGATTGCAACATAATAGGTTTCTCATAACTAAACTTGTTAATGGGTGTTCAAATATTGGACACATTTTTTATGCACGCAAGCTGTTTGATGAATTTCCCGACCCGGATTTGTTTATGTGGAATGCTATTATTAGAAGTTATTCGAGAAACAATATGTATATGGATGTTATTGAAATGTATAGGTGGATGAGATTGGTAGGATTGCATCCAGATAAGTTCACTTTTCCTTGTGTGCTTAAAGCTTGTAGTGAGTTGTTGGATTTCGGTTTGAGTTGCTTAGTTCATGCACATATAACTGTTTATGGATTTGGGTCGCATGTTTTTGTTCAGAATGGTCTTGTGGTGTTGTATGCTAAATGTGGTCGCATTGATATGGCGAGAGTGGTGTTTGATAGCTTATATGATAGAACAATTGTTTCGTGGACTGCCATCATTTCCGGATATGCACAGAATGGGGAAGCTTTGGAAGCATTGAGATTGTTCAATCAAATGAGAAATACTGATGTGAAACCGGATTGGATTTCTCTGGTAAGCGTTATGAAGGCTTATACCGATGTAGATGACTTGGAGCAAGGAAAATGTCTTCATGGTTGTGTCATCAAAACAGGTCTTGAAGACGAGCCTGATTTGCTCATCTCACTTACAGCTTTCTATGCAAAATGTGGACTGGTGACAGTTGCAAGATATTTCTTTGATCAAATGAAGACACCGAATAATGTGATGATGTGGAATGCAATGATATCTGGTTATGCAAAAAACGGCCATGCCGAGGAGGCGGTAGATCTATTTCGTTGTATGATTTCGAGAAATATTCAACCAGATTCTATCACCGTAAGGTCAGCAATTTTAGCTTCTGCACAAGTTGGTTCCCTCAAACTAGCACAATGGATGGATGACTTTGTCAGAAAGAGTAAATACAGAGGTGATATATTCGTTATTACAACACTCATTGATATGTATGCAAAATGCGGAAGTATCGAATCTGCCCGTGGGGTATTCGATCGTGCTTCTGTTAAGGACGTTGTTATGTGGAGTGCCATGATTATGGGATATGGATTGCATGGTCAAGCTTGGGAAGCCATTTATCTTTATCATGCAATGAAACAAGAAGGGGTGTGCCCAAATGATGTCACCTTTATTGGCCTTCTCACAGCATGCAGTCATTCTGGTCTTGTAAAAAAAGGGTGGGAGCTATTCCATTGCATGAGAGACTTTGGAATTAAGCCTCGCAATGAACATTATTCTTGTGTCGTTGATCTCTTAGGGCGTGCAGGTTATTTGGATCAGGCTTTTGTTTTTATCTTGAAAATGCCGATTGAACCGGGTGTGAGTGTATGGGGAGCATTACTTAGTGGATGCAAGATTTGTCGTTCTGTAACATTGGGAGAATATGCTGCACAAAAGCTTTTCTCATTAGATCCGTATAATACGGGGCACTACGTACAACTGTCTAATCTCTATGCTTCCTCTCGCATGTGGGACCGTGTTGCATATGTTCGAGTTTTGATGAAGGAGAAAGGATTGATTAAGTACCTTGGTTATAGTGTTATTGAAATCAATGGGAAGCTACATACATTTCATGCAGGCGACATGTCACATCCACGAGCTAAGGATATTTTCGATGAACTTCAAAGGCAAGAAAGACGGTTAAAGGAGGTTGGGTTTGTCCCACATACAGAATCTGTTTTGCATGATCTGAATTATGAAGAGAAGGAGGAGAATCTCTGTATACACAGTGAGAGAATAGCAGTTGCTTATGGGCTTATTAGTACTGCTCCTGGAACTACTCTTAGAATAACGAAGAATCTTCGAGCATGTGTAAATTGTCATTCAGCAATAAAGCTTATATCAAAGCTTGTCGAAAGGGAGATAATTGTAAGGGATGCAAATCGGTTTCATCATTTTAAAGATGGTTTGTGTTCTTGTGGGGACTATTGGTGA 2175 0.3848 MAWIFSLPSLITKHKKITPFEIHTCLILKFIKHFCSSPVYQPHELDHCIKSNSFYESLIDNSTHITHLYQIHDKLIVSGLQHNRFLITKLVNGCSNIGHIFYARKLFDEFPDPDLFMWNAIIRSYSRNNMYMDVIEMYRWMRLVGLHPDKFTFPCVLKACSELLDFGLSCLVHAHITVYGFGSHVFVQNGLVVLYAKCGRIDMARVVFDSLYDRTIVSWTAIISGYAQNGEALEALRLFNQMRNTDVKPDWISLVSVMKAYTDVDDLEQGKCLHGCVIKTGLEDEPDLLISLTAFYAKCGLVTVARYFFDQMKTPNNVMMWNAMISGYAKNGHAEEAVDLFRCMISRNIQPDSITVRSAILASAQVGSLKLAQWMDDFVRKSKYRGDIFVITTLIDMYAKCGSIESARGVFDRASVKDVVMWSAMIMGYGLHGQAWEAIYLYHAMKQEGVCPNDVTFIGLLTACSHSGLVKKGWELFHCMRDFGIKPRNEHYSCVVDLLGRAGYLDQAFVFILKMPIEPGVSVWGALLSGCKICRSVTLGEYAAQKLFSLDPYNTGHYVQLSNLYASSRMWDRVAYVRVLMKEKGLIKYLGYSVIEINGKLHTFHAGDMSHPRAKDIFDELQRQERRLKEVGFVPHTESVLHDLNYEEKEENLCIHSERIAVAYGLISTAPGTTLRITKNLRACVNCHSAIKLISKLVEREIIVRDANRFHHFKDGLCSCGDYW* 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2880 724 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 418 452 IPR002885 -
Tpr6g2880 724 Gene3D Tetratricopeptide repeat domain 376 595 IPR011990 GO:0005515
Tpr6g2880 724 Gene3D Tetratricopeptide repeat domain 282 375 IPR011990 GO:0005515
Tpr6g2880 724 Pfam E motif 537 596 IPR046848 -
Tpr6g2880 724 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 114 148 IPR002885 -
Tpr6g2880 724 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 453 487 IPR002885 -
Tpr6g2880 724 SUPERFAMILY TPR-like 276 415 IPR011990 GO:0005515
Tpr6g2880 724 Pfam PPR repeat 392 413 IPR002885 -
Tpr6g2880 724 Pfam PPR repeat family 113 160 IPR002885 -
Tpr6g2880 724 Pfam PPR repeat family 317 358 IPR002885 -
Tpr6g2880 724 Pfam PPR repeat family 417 465 IPR002885 -
Tpr6g2880 724 Pfam PPR repeat family 215 261 IPR002885 -
Tpr6g2880 724 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 215 249 IPR002885 -
Tpr6g2880 724 TIGRFAM PPR: pentatricopeptide repeat domain 420 453 IPR002885 -
Tpr6g2880 724 TIGRFAM PPR: pentatricopeptide repeat domain 320 353 IPR002885 -
Tpr6g2880 724 TIGRFAM PPR: pentatricopeptide repeat domain 117 149 IPR002885 -
Tpr6g2880 724 TIGRFAM PPR: pentatricopeptide repeat domain 217 251 IPR002885 -
Tpr6g2880 724 Gene3D Tetratricopeptide repeat domain 10 170 IPR011990 GO:0005515
Tpr6g2880 724 Gene3D Tetratricopeptide repeat domain 171 281 IPR011990 GO:0005515
Tpr6g2880 724 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 317 351 IPR002885 -
Tpr6g2880 724 PANTHER - 39 718 - -
Tpr6g2880 724 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 39 718 - -
Tpr6g2880 724 Pfam DYW family of nucleic acid deaminases 632 724 IPR032867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2880 Tpr-Chr6 31226703 31232694 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2880 103 724 Glycoside Hydrolase AT3G49170 38.766 1.08e-142 437
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2880 - - gmx:100798106 1170.22