Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2823 ATGGGTAGCACATTCAATCCACAGATTTTAGTGGAAAAATTAGCCAAGCTGAATAGCTCGCAGACAAGCATAGAGACTTTGTCACATTGGTGCATATTTCATATGAACAAAGCCAAACTAGTTGTGGAAACATGGGCAAAACAGTTCCATTGCTCTCCTCGTGAGAAGAAATTGCCATTTCTGTTTCTTGCAAATGATATTTTACAAAACAGCAGGCGAAAGGGTTCTGAATTTGTAGGTGAATTTTGGAAGGTTCTTCCAGATGCTCTTCGAGATGTCATTCAAAATGGAGACGACTATGCAAGGAATCAAGCGATGCGACTGGTTGGTATATGGGAAGAAAGAAAAGTTTTTGGTTCTCGTGGTCAAATCCTCAAGGAAGAAATTGTTGGGAGGCATGCGGAAAACAATAACCGTGATGTGAAACCTATGAATGTGAAACCTACAAATGTGAAACCTATGAATGTGAAACTGAGGCCATCTGCTGGGAATGCATTGGATAAGATAGTTTCTGGCTATCATCATATTTATGGAGGACAGACAGATGAAGATGCTGTATTAAGCAAATGCAGGAATGCCATTAGCTCTCTTGAGAAAGCAGATAATGATAGTAATTCAGGGAACCTCCATGGATCTGCAGTAGTGAATGAGCTCCAGGGGCATAATGCCATACTAAAGGACTGCATTGAGCAGTTAACAGCAATAGAATCATCAAGAGCTGGCCTTGTGTCTCACCTGAGAGAGGCACTTCAGGATCAGGAATTCAAGCTGGATCAAGTCCGTAGCCAGATTCAGGCTGCTCGTGTTCAGTGGGAACATGCGAACAATACTTGCAACAATATTCAGTCATTAGTTGAACAGAGCTCAAAGGAAATTCAAACCTCCATGATACCTGCAAATTTTATCTCTGGTGGGGAGCAATCAACCCCGTTAATGTATGCACAACAAGGGCTGTATTATCAAAATTCTGGACATGGCGAAGAAGATCCGCGCAAGTCTGCAGCCGCCGCAGTGGCAGCAAAGCTTACTGCATCCACATCATCCATCCAGATGCTGTCTTGTGTGCTATCCTCTTTCGCAGCATCAGAAGGTGTCATAGGCAATCCGATGACAGAGTCTTCTGCTGAATATCACTCTGAAAAGAGAACTAAGCTTGAAAATGGTCAGTCATCTTACGTGCCATCTCAGAATCCTCAACAACCTCTTCCTCCCTATTCACTTTCTGAAACTACCCAACACAATGCATCTACATCCAACGAGCAGTATACTCCAAATGATCAGCCACCACCTCCACCCTCATCATCACCACCCCCATTACCCCCACTGCCACCAGCACCTCAACAATACCCGGTGCCGCAGTATATGCCGACTGTTGGATCGGTTAACAATATGGCATACAACTATGGTGTGATGCAACAACAGCCATCAATGGCAACCTATCCTGCAGTTGGGGTTGCCATGAACAATGCTTCTCCTTTTACACCACCTATGAATGCTTATCAGGGTTTTCAGGGTTCTGATGGAAATTACTATAACCAGTCCTCAGTGCCTGTGGTCCCCATCTCTCGCCAGTAA 1575 0.4419 MGSTFNPQILVEKLAKLNSSQTSIETLSHWCIFHMNKAKLVVETWAKQFHCSPREKKLPFLFLANDILQNSRRKGSEFVGEFWKVLPDALRDVIQNGDDYARNQAMRLVGIWEERKVFGSRGQILKEEIVGRHAENNNRDVKPMNVKPTNVKPMNVKLRPSAGNALDKIVSGYHHIYGGQTDEDAVLSKCRNAISSLEKADNDSNSGNLHGSAVVNELQGHNAILKDCIEQLTAIESSRAGLVSHLREALQDQEFKLDQVRSQIQAARVQWEHANNTCNNIQSLVEQSSKEIQTSMIPANFISGGEQSTPLMYAQQGLYYQNSGHGEEDPRKSAAAAVAAKLTASTSSIQMLSCVLSSFAASEGVIGNPMTESSAEYHSEKRTKLENGQSSYVPSQNPQQPLPPYSLSETTQHNASTSNEQYTPNDQPPPPPSSSPPPLPPLPPAPQQYPVPQYMPTVGSVNNMAYNYGVMQQQPSMATYPAVGVAMNNASPFTPPMNAYQGFQGSDGNYYNQSSVPVVPISRQ* 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2823 524 MobiDBLite consensus disorder prediction 371 437 - -
Tpr6g2823 524 MobiDBLite consensus disorder prediction 386 423 - -
Tpr6g2823 524 Coils Coil 243 270 - -
Tpr6g2823 524 Gene3D - 2 130 IPR008942 -
Tpr6g2823 524 SUPERFAMILY ENTH/VHS domain 11 117 IPR008942 -
Tpr6g2823 524 CDD CID_RPRD_like 7 129 - -
Tpr6g2823 524 Pfam CID domain 9 120 IPR006569 -
Tpr6g2823 524 SMART 558neu5 9 130 IPR006569 -
Tpr6g2823 524 ProSiteProfiles CID domain profile. 2 134 IPR006569 -
Tpr6g2823 524 PANTHER CYCLIN-DEPENDENT KINASE INHIBITOR-RELATED PROTEIN 1 524 - -
Tpr6g2823 524 PANTHER OS01G0925000 PROTEIN 1 524 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2823 Tpr-Chr6 30684683 30693130 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2823 K15559 - gmx:100806108 718.383