LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr6g2769	ATGTTGGCGAGAGAGGCAGAATTCTTTCAAATGTTGCCGCTAAAACTGCAATCCTTCCTCAAACACTGCACCGCCACCACCACAACATCGTGGCTACCAAAAACCTCATCATCACTTGCATTTCCATCCCAAAATCATAAACCACCCACCCTAACATTCCTCGCCGACAATTCCACCACCATACAACACCTCAAACAAGTCCACGCACAAATGATCATTTCTTCACACATCAACGACGAATTCGCCGCAAGCCGTTTATTCTCATCATTCGCACTTTCCCCTTTCGGTAACCTCACTCACGCTACTAAAATCTTCTCTTCCATACATAAACCCAATTCCTTCATGTGGAACACTCTCATTCGCGCTCAACAACAACCCCACAAATCTCTCTCCCTTTACGTCTCAATGCGTAGACTTGGTGTCTTACCAGGTAAACACACTTTCCCTTTTCTCCTCAAAGCTTGTTCGTCACTCTCGAATCCGTTGTTACCTTGTAAACAAGTTCATTCACATGTGGTTAAATTTGGGTTGTGTTTTGATTGTCATGTGGCTAATGGTTTGGTGCGTGGTTATTGTGTTTCTGGTGATTTGGTTGATGCCCGGTACGTGTTTGATGAAATTCCGATGAAAAGTTTGAGTCTTTGGACTAGTATGATTTGTGGGTATGCTCAGAATTTTTGTTATAATGAGGCTTTAGAGCTTTTTGAGGGGATGATTGTTGAAGGTTTTGAGCCTAATGGTGCTACCTTGGCTTCGGTTTTGTCTGCTTGTGCTCGGTCGGGTTGTCTTGAGCTTGGGGAAAGGATTCATGAGTTTATGAGAGTGAAAGGGGTTGAAGTGGGAGTGATACTTGGGACGGCGTTGGTTTATATGTATGCGAAGAATGGGGTGATTTTAATGGCGAGGAAGTTGTTTGATGAAATGCCTGAGAGGAATGTTGTTACTTGGAATGCTATGATTTGTGGTTTGGCTTCTCATGGATATGTTGATGATGCTCTTAGTTTATTTGAGAGTATGAAGAAGGAGGGGATTGTTGTTCCTAATGGTGTTACATTTGTTGGGGTTTTAAATGCTTGTTGTCATGCAGGTTTGATTGATGTCGGTCGCGAGGTTTTTTGTTCGATGAAAGTTGTGTATGGAATTGAACCGAAGATTGAGCATTATGGGTGCATGGTTGATCTTCTTGGGAGAGGAGGTAAGTTGTTGGAGGCAGAGGAAATGATAAAAAGGATGCCGTGGAAACCGGACGTGGTTATTTTGGGATCTTTGCTGGCAGCTAGCAAGAATAATGGAAACACTGAGGTTGCTGAAAGGGTGGTGAAAGAAATTCTTAATCTGGAACCTCACAATCATGGAGTTCATGTTGCTTTGTCGAATATGTACGCAGAGGCTGGACTATGGCAGGAAGTTTCAAGACTGAGGAAGATGATGAAAGAAGAGAAACTCAAGAAAGATCCGGCGTGGAGCCTTGTTGCAACTTAA	1482	0.4318	MLAREAEFFQMLPLKLQSFLKHCTATTTTSWLPKTSSSLAFPSQNHKPPTLTFLADNSTTIQHLKQVHAQMIISSHINDEFAASRLFSSFALSPFGNLTHATKIFSSIHKPNSFMWNTLIRAQQQPHKSLSLYVSMRRLGVLPGKHTFPFLLKACSSLSNPLLPCKQVHSHVVKFGLCFDCHVANGLVRGYCVSGDLVDARYVFDEIPMKSLSLWTSMICGYAQNFCYNEALELFEGMIVEGFEPNGATLASVLSACARSGCLELGERIHEFMRVKGVEVGVILGTALVYMYAKNGVILMARKLFDEMPERNVVTWNAMICGLASHGYVDDALSLFESMKKEGIVVPNGVTFVGVLNACCHAGLIDVGREVFCSMKVVYGIEPKIEHYGCMVDLLGRGGKLLEAEEMIKRMPWKPDVVILGSLLAASKNNGNTEVAERVVKEILNLEPHNHGVHVALSNMYAEAGLWQEVSRLRKMMKEEKLKKDPAWSLVAT*	494

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr6g2769	493	Gene3D	Tetratricopeptide repeat domain	209	262	IPR011990	GO:0005515
	Tpr6g2769	493	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	246	280	IPR002885	-
	Tpr6g2769	493	PANTHER	REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED	41	492	-	-
	Tpr6g2769	493	TIGRFAM	PPR: pentatricopeptide repeat domain	214	246	IPR002885	-
	Tpr6g2769	493	TIGRFAM	PPR: pentatricopeptide repeat domain	185	207	IPR002885	-
	Tpr6g2769	493	TIGRFAM	PPR: pentatricopeptide repeat domain	314	347	IPR002885	-
	Tpr6g2769	493	TIGRFAM	PPR: pentatricopeptide repeat domain	350	383	IPR002885	-
	Tpr6g2769	493	Gene3D	Tetratricopeptide repeat domain	56	162	IPR011990	GO:0005515
	Tpr6g2769	493	PANTHER	OS11G0483950 PROTEIN	41	492	-	-
	Tpr6g2769	493	Pfam	E motif	432	491	IPR046848	-
	Tpr6g2769	493	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	211	245	IPR002885	-
	Tpr6g2769	493	Pfam	PPR repeat family	311	361	IPR002885	-
	Tpr6g2769	493	Gene3D	Tetratricopeptide repeat domain	263	345	IPR011990	GO:0005515
	Tpr6g2769	493	Gene3D	Tetratricopeptide repeat domain	346	451	IPR011990	GO:0005515
	Tpr6g2769	493	Pfam	PPR repeat	185	208	IPR002885	-
	Tpr6g2769	493	Pfam	PPR repeat	214	243	IPR002885	-
	Tpr6g2769	493	Pfam	PPR repeat	252	278	IPR002885	-
	Tpr6g2769	493	Pfam	PPR repeat	387	412	IPR002885	-
	Tpr6g2769	493	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	312	346	IPR002885	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr6g2769	Tpr-Chr6	30191474	30196828	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr6g2769	65	491	Glycoside Hydrolase	AT3G49170	33.949	3.23e-71	240

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr6g2769	-		-	mtr:MTR_7g033400	810.446