Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1553 ATGGCACCAAGATGGAAAGGAAAAGATGCAAAATCAAAAAAGGATGCAGAAGCCGAGGCACTTAGAGAACCCATGTCAATGATTATATCACAACTTCAGTCTTCTTTAGTTCAATCAAATACTTGTGGATTTCTCTCTGATAATTGTGTACACTTAGCAGTGCAAGCAGAACAACTTGACCTGCTTGATAAATCATGCTTTGGTCGACCTGTGAGAACAGTTGAAAAGGACATGTACTGGTTTCAATTAACCTTGGAGGAAGCATTCTACCTATGTTATTTCTTGAAATGCCTCAAGATTAATGGTGGTGCTGACACTGGTCCCTCAAATGATGAACAACTGTGGCGTTACTTCAAGTCCAAGAAAGAAGCATTCCCTTGCTTTTACAAGGCTTATTCTCACCTTCGAATGAAAAATTGGGTAGTGAGGTCAGGGGCTCAGTATGGTGTAGACTTCATTGTCTATCGCCATCATCCGGCACGGGTGCATTCTGAGTACGGTGTACTTGTTCTATCACATGACAATGATGATGATCCAAATGGAAGATTAAGAGTATGGTCTGATGTTCATTGCTCAACTCGACTTCTAGGAAGTGTTGCAAAAACCTTATTAGTTTTGTACATTAATAAAAATGGTCACAGTGATGAGTCTCCATTATGTTTGGCAAACTATACCATTGAAGAACGTACAATCTCCAGATGGAGTCCAGAACAATGCCGTGAAAGATCCATATAG 735 0.4014 MAPRWKGKDAKSKKDAEAEALREPMSMIISQLQSSLVQSNTCGFLSDNCVHLAVQAEQLDLLDKSCFGRPVRTVEKDMYWFQLTLEEAFYLCYFLKCLKINGGADTGPSNDEQLWRYFKSKKEAFPCFYKAYSHLRMKNWVVRSGAQYGVDFIVYRHHPARVHSEYGVLVLSHDNDDDPNGRLRVWSDVHCSTRLLGSVAKTLLVLYINKNGHSDESPLCLANYTIEERTISRWSPEQCRERSI* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1553 244 SUPERFAMILY tRNA-intron endonuclease catalytic domain-like 125 213 IPR036167 GO:0006388
Tpr6g1553 244 PANTHER TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN2-1-LIKE 1 243 - -
Tpr6g1553 244 Pfam tRNA intron endonuclease, catalytic C-terminal domain 129 212 IPR006677 GO:0000213|GO:0006388
Tpr6g1553 244 PANTHER TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN2 1 243 IPR006676 GO:0000213|GO:0006388
Tpr6g1553 244 Pfam tRNA intron endonuclease, N-terminal domain 43 102 IPR006678 GO:0000213|GO:0006388
Tpr6g1553 244 Gene3D - 124 218 IPR011856 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1553 Tpr-Chr6 16814167 16816326 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1553 K15322 - gmx:100810335 386.341