Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1552 ATGGAAAAACCGTCGCCACTCTTCATCTTTCAAATCATCTTAATATTTCTTCTCACCCAATCACTTCCTGCCACGTCATCAAACTCTCCAAAACCCGTTACATTTTCCGTCACCGAATTCGGAGCAACCGGCGACGGCGTCCACTACGACACCGTTTCAATCCAGTCAGCCATCGACTCATGTCCATACTCCATCCCCTGCCGCGTCACCTTCCCGGCGCCGGGTAAGTACCTGACAGCAACCGTATTCCTTAGATCCGGCGTGGTGCTGAACGTGGAAACCGGTGCCACCATCTTCGGCGGTCCGAAACTTGAAGATTATCCGAAGGAATCATCGAGGTGGTATGTGGTGTTGGCGGAGAACGCGACGGATGTTGGAATTGAAGGCGGCGGTGTGGTGGATGGACAGGCGGAGAAATTTGTAGTTAGATATAATGAGAGGAAGAATGTAATGGTGAGCTGGAATGAGACTGGGAGTTGTTTGGGTGATGAATGTAGACCTAGATTAATCGGTTTTCTTGGATGCAAGAATGTTAGAATCTTCAATATTACACTCAATCAACCTGCTTATTGGTGCTTACACTTGGTACGAAGTGAAAACATATCAATTCATGATATTGCAATTTATGGAGACTTGAATATACCAAACAACGATGGAATTGACATTGAGGACTCGAATAACACAGTAATCACTCGATGCCACATTGATACAGGTGATGATGCAATCTGTCCAAAATCATCCACTGGCCCTCTTTACAACTTAACTGTCACCGATTGTTGGATTCGATCCAAATCTTCTGCAATCAAATTTGGCAGTGCTAGTTGGTTTGAATTTAAGCATTTTGTCTTTGACAATATCACTATTTTTGATTCTCATAGAGGGCTTGCGTTCCAGATCCGTGATGGAGGAAATGTAAGTGACATTGTCTTCTCAAACATAAACATAAGCACAAGATACTATGATCCATTATGGTGGGGAAGAGCCGAGCCTATCTATGTCACAACTTGCCCAAGAGACAAAACCTCAAAAGAGGCTTCAATCTCAAATGTTCGCTTCATCAACATCACCGCAAATTCTGAAAATGGAATCTTCCTCTCTGGTTCAAAGAGAGGATTGTTGAGAAATTTGAGTTTCATCAACATGAATATCACTTATAGAAGGTTCACCAGTTATGCCGGTGGATTGTTTGACTATAGGCCAGGATGCCAAGAATTGGTTAAACATAAGACTGCTGGGATTATGATGGAACACATTGAAGGTCTTGAGGTTAGAAATGTAGAAATGAGATGGGAAAATAATGAGCTAGAGCAGTGGAATAATCCTATGGAGTTCAAAACGAATACTGTGAATAACATCCATTTTTCTAATTTTAATTCTGTTTTGTATTCAAATAGCATATCAAGTTCATAA 1410 0.4191 MEKPSPLFIFQIILIFLLTQSLPATSSNSPKPVTFSVTEFGATGDGVHYDTVSIQSAIDSCPYSIPCRVTFPAPGKYLTATVFLRSGVVLNVETGATIFGGPKLEDYPKESSRWYVVLAENATDVGIEGGGVVDGQAEKFVVRYNERKNVMVSWNETGSCLGDECRPRLIGFLGCKNVRIFNITLNQPAYWCLHLVRSENISIHDIAIYGDLNIPNNDGIDIEDSNNTVITRCHIDTGDDAICPKSSTGPLYNLTVTDCWIRSKSSAIKFGSASWFEFKHFVFDNITIFDSHRGLAFQIRDGGNVSDIVFSNINISTRYYDPLWWGRAEPIYVTTCPRDKTSKEASISNVRFINITANSENGIFLSGSKRGLLRNLSFINMNITYRRFTSYAGGLFDYRPGCQELVKHKTAGIMMEHIEGLEVRNVEMRWENNELEQWNNPMEFKTNTVNNIHFSNFNSVLYSNSISSS* 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1552 469 PANTHER PECTIN LYASE-RELATED 22 461 - -
Tpr6g1552 469 Pfam Glycosyl hydrolases family 28 69 385 IPR000743 GO:0004650|GO:0005975
Tpr6g1552 469 Gene3D - 16 393 IPR012334 -
Tpr6g1552 469 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 22 461 - -
Tpr6g1552 469 SUPERFAMILY Pectin lyase-like 13 383 IPR011050 -
Tpr6g1552 469 SMART pbh1 198 224 IPR006626 -
Tpr6g1552 469 SMART pbh1 225 246 IPR006626 -
Tpr6g1552 469 SMART pbh1 305 327 IPR006626 -
Tpr6g1552 469 SMART pbh1 342 367 IPR006626 -
Tpr6g1552 469 SMART pbh1 251 272 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1552 Tpr-Chr6 16806900 16811423 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1552 33 463 Glycoside Hydrolase AT3G57790 67.347 0.0 632
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1552 - - mtr:MTR_7g092470 839.336
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g1552 6 16806900 16811423 Tpr6g1552 6 16806900 16811423 ECH