Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1540 ATGAAGAACAATGCATCACCTACCTCTTCAGATCAATGCATATCTATTAACACTCCTCTTCTTGACTTGGAAAAGGAGGCTGAGATATCAAGTGGTGGAGTGTCACAAAACACAGTCATAGAGGATGCAGAGAAAGATGAATATAGCATTAATGATAGTCCTATTGAGCAAGTGAGACTAACGGTTCTGACCACCGATGACCCTTCTCAGCCGGCGCTAACATTCCGGACATGGGTTCTAGGGTTAGTATCATGTGTGCTACTTGCATTTGTGAACCAGTTTTTAGGCTACAAAACCAACCCTTTGAAAATCACTTCTGTCTCAGTTCAGATTATTAGCCTCCCACTTGGAAAACTTATGGCTGCAACACTTCCCACAAAACCAATTCAAGTCCCTTTTACAACCCGGTCGTTTTCGTTGAATCCGGGTCCATTCTCTTTGAAAGAACATGTGTTGATAACCATCTTTGCTAGCTCAGGATCTAGTGGTGTTTATGCAATTAACATCATCACAATTGTTAAGGCTTTCTATCATAGAACCATCCATCCCGTAGCGGCTTATTTGTTAGCTCTATCGACTCAGATGCTAGGGTATGGATGGGCCGGGATTTTCAGAAGGTTCCTTGTTGATTCTCCTTACATGTGGTGGCCTCAAAACCTTGTGCAGGTTTCTCTATTTAGGGCATTTCATGAAAAAGAAAAAAGGCCTAAAGGAGGAACTTCTAGACTGCAATTCTTTTTCTTAGTCTTTGTAGCCAGCTTTGCATATTACATCGTTCCGGGATACCTTTTCCAAGCAATATCAACTGCCTCCTTTGTTTGCCTGATTTGGAAAGATTCCATAACTGCACAACAGATCGGTTCGGGCATGAAAGGCCTTGGTATCGGTTCATTCGGCCTTGACTGGAACACTGTTGCCGGCTTTTTAGGTAGTCCTTTGGCTGTTCCTGGCTTTGCCATTGCCAACTTAATGGCTGGATTTGTATTATATATGTATGTTTTGATTCCAATTGCCTATTGGAACAATTTATATAATGCTAAAAAGTTCCCCCTCATTAGTTCTCACACATTTGACTCAACCGGTGCAACATACAACGTTACTCGGATTCTCAATACCAAAACTTTCGACATCAATATGGAGAGTTACAACAATTACAGCAAGATCTATATGAGTGTCACGTTCGCGTTCGAGTACGGAATGTGCTTTGCAGCTCTTACAGCCACTATTTCGCACGTTGTCCTCTTCCACGGAAAAATGATACTTGAGATGTGGAAGAAGACAACGAGTTCACTAAAATACCAACTCGGAGATGTGCATACAAGAATTATGAAGAAAAACTATGAACAAGTCCCTGAATGGTGGTTTGCCACCATTCTGATTTTAATGTTTATGATGGCCTTAGTAGCTTGCGAAGGCTTCGGCAAGCAGCTCCAACTTCCATGGTGGGGAATCCTACTCTCTCTAGCAATTGCATTAGTTTTCACCTTACCAATTGGAGTCATTGAAGCAACGACAAATATAAGATCAGGCCTTAATGTGATCACAGAGTTGGTCATTGGTTTCATATACCCCGGAAAGCCGCTCGCTAACATGGCATTCAAGACATACGGCCATATCAGCATGGTACAAGCACTTGGTTTTCTCGAGGATCTCAAATTAGGTCACTATATGAAAATTCCACCAAAATCAATGTTCATTGTTCAGCTAGTTGGCACAGTAGTTTCTTCATCTGTTCACTTTGGAACAGCATGGTGGCTTCTAACATCTATCGAGAACATATGCGATGAATCATTGTTGCCGAAAGGTAGTCCTTGGACATGTCCTGGTGACGACGTGTTTTACAACGCTTCCATTATATGGGGAGTAGTAGGTCCAAAGCGAATGTTTACCAACGACGGCGTTTATCCTGAGATGAATTGGTTTTTCCTTATTGGTCTAATTGCACCTGTTCCAGTGTGGCTTCTTTCTATCAAATTTCCTAACCACAAATGGATTAAACTCATTAACATTCCTATTATCATTGCAGGTGCATCTGACATTCCACCAGTGAGATCTGTGAATTATATTACTTGGGGAATTGTTGGAATGTTCTTTAATTTCTATGTTTATAGAAAGTTTAAGACTTGGTGGGCAAGGCATACTTATATCCTTTCAGCTGGTTTAGATGCTGGAGTTGCTTTTATGGGTTTAGTCCTTTATTTTGCACTTCAATCTTATGGTATTTTTGGTCCAACTTGGTGGGGTCTTGAAGCAGATCATTGCCCTTTGGCTGCATGCCCTACAGCTCCAGGTGTATATGCAGAGGGTTGTCCTATTTCCTGA 2322 0.4152 MKNNASPTSSDQCISINTPLLDLEKEAEISSGGVSQNTVIEDAEKDEYSINDSPIEQVRLTVLTTDDPSQPALTFRTWVLGLVSCVLLAFVNQFLGYKTNPLKITSVSVQIISLPLGKLMAATLPTKPIQVPFTTRSFSLNPGPFSLKEHVLITIFASSGSSGVYAINIITIVKAFYHRTIHPVAAYLLALSTQMLGYGWAGIFRRFLVDSPYMWWPQNLVQVSLFRAFHEKEKRPKGGTSRLQFFFLVFVASFAYYIVPGYLFQAISTASFVCLIWKDSITAQQIGSGMKGLGIGSFGLDWNTVAGFLGSPLAVPGFAIANLMAGFVLYMYVLIPIAYWNNLYNAKKFPLISSHTFDSTGATYNVTRILNTKTFDINMESYNNYSKIYMSVTFAFEYGMCFAALTATISHVVLFHGKMILEMWKKTTSSLKYQLGDVHTRIMKKNYEQVPEWWFATILILMFMMALVACEGFGKQLQLPWWGILLSLAIALVFTLPIGVIEATTNIRSGLNVITELVIGFIYPGKPLANMAFKTYGHISMVQALGFLEDLKLGHYMKIPPKSMFIVQLVGTVVSSSVHFGTAWWLLTSIENICDESLLPKGSPWTCPGDDVFYNASIIWGVVGPKRMFTNDGVYPEMNWFFLIGLIAPVPVWLLSIKFPNHKWIKLINIPIIIAGASDIPPVRSVNYITWGIVGMFFNFYVYRKFKTWWARHTYILSAGLDAGVAFMGLVLYFALQSYGIFGPTWWGLEADHCPLAACPTAPGVYAEGCPIS* 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1540 773 PANTHER OLIGOPEPTIDE TRANSPORTER OPT FAMILY PROTEIN 1 772 - -
Tpr6g1540 773 TIGRFAM ISP4_OPT: small oligopeptide transporter, OPT family 51 737 IPR004648 GO:0055085
Tpr6g1540 773 PANTHER ISP4 LIKE PROTEIN 1 772 IPR004648 GO:0055085
Tpr6g1540 773 TIGRFAM OPT_sfam: oligopeptide transporter, OPT superfamily 57 737 IPR004813 GO:0035673
Tpr6g1540 773 Pfam OPT oligopeptide transporter protein 73 735 IPR004813 GO:0035673
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1540 Tpr-Chr6 16672813 16675933 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1540 18 772 Organic Solute Cotransporters AT5G55930 65.212 0.0 1034
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1540 - - gmx:100820498 1366.29