Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1526 ATGCAGAAGGAAGATGATACAAGTGTCAACCAAGCAATGATGGATCCTCTTCAACTTCACATGAATCAACAACAACAACAACAACAACCTTTATACAGAAACATATGCAACACACTTCTGTCTCTAACATACTCTCGTTCACTCTCGAAAGGTCTTCAATTACATGCTCACATTATCAAATTAGGTTTACAATCAATCCCTCTTCTCTCCCATCATCTCATCAATTTCTACTCCAAAACCCATCTCCCTTATTCCTCTCTTCAAATCTTCAACGATTCATCTCACAAATCTCCCACTACCTGGAGCTCAATTATCTCTTCATTTGCCCAAAATGACCTCCCTTTACTTTCTCTACACTTTTTCCAACTCATGATCCGTCATGGTCTCCCTCCTGATGACCACATTTTCCCTAGTGCTACTAAATCATGTGGTATTCTAGCTTCGTTACCTTTGGCGCAATCGCTTCATTGTTTTGCTTATAAGACTGCTTACCATGTTGATCTTTTTGTGGGAAGTTCTATTGTTGATATGTATGGTAAATGTGGTGATATTTATAATGCGCGTAATGTGTTCGATGAAATGCCGTATAGAAATGTTGTTTCTTGGAGTGGTTTGATTTATGGGTATGTTCAATTGGGTGAGGATGATGAAGCTTTGAGGCTTTTTAAACGGTTTCTTGTTGAAGAAGAAAACGAGGGTGTTAATGATTTTACTTTGTCCAGTGTTTTAAGGGTTTGTGGTGGTTCTACTTTTCTTCAAATGGGTAAGCAAATACATGGGTTGAGTTTTAAGACCAGTTTTGATTCGTCTTGTTTTGTTGCGAGTTCTTTAATTTCGTTGTATTCTAAATGTGGGGTTGTTGAGGAAGCTTATGATGTTTTTGAGGAGGTTACTGTTAGGAACCTTGGGATGTGGAATGCTATGTTAATTGCCTGTGCTCAGCATGCTCACACGAATAAAACGTTTGAGTTGTTTGATAAGATGAAGAGTGTTGGTGGTGTGAAAGCTAATTTTATTACATTTTTGTGTGTGCTTTATGCGTGCAGCCATGCAGGGTTGGTAGAGAAGGGTAAGTATTACTTTGAGTTGATGAAGGATTATGGTATTGAACCTGGGACACAACATTATTCAACCTTGGTGGATTTGCTTGGTCGTGCTGGCAAGTTGAACGAAGCAGTTAAGGTGATTGAGGAAATGCCTATGGAACCTACTGAATCTGTTTTGGGAGCTTTGTTAACTGGGTGTAGAATACACGGGAATACTGAATTGGCATCTTATGTAGCTGATAGAGTTTCTGAGTTGGGTTCTGTCAGTTCTGGACTTCAAGTTCTGCTTTCTAATGCTTATGCTGCTGCTGGGAGATGGGAGGAAGCAGCGAGAGCGAGGAAAACACTGAGGGACAAAGGAATAAAGAAGGAAACTGGGTTGAGTTGGGTGGAGGAAGGGAATAGAGTTCATACATTTGCTGCTGGGGATAGGTCTCATGCGAAGACACTGGAAATTTATGATAAGTTAGAGGAATTGGGAGAAGAAATGGAGAAAGCCGGTTATGTTGCTGATACGTCTTTTGTGTTAAGAGAAGTGGATGGTGAAGAGAAGAGTAGAAGTATTAAGTATCATAGTGAGAGATTAGCTATTGCATTTGGACTTATTACGTTCCCTCAGGGACAACCGATTAGAGTGATGAAGAATTTGCGTGTTTGTGGCGATTGTCATACTGCTATCAAGTTTATTAGTAAATGTACTGGAAGGGTTATCATCGTGAGGGACAATAATCGGTTCCATCGATTTGAGGATGGAAAATGTACTTGTGGAGATTATTGGTGA 1827 0.3985 MQKEDDTSVNQAMMDPLQLHMNQQQQQQQPLYRNICNTLLSLTYSRSLSKGLQLHAHIIKLGLQSIPLLSHHLINFYSKTHLPYSSLQIFNDSSHKSPTTWSSIISSFAQNDLPLLSLHFFQLMIRHGLPPDDHIFPSATKSCGILASLPLAQSLHCFAYKTAYHVDLFVGSSIVDMYGKCGDIYNARNVFDEMPYRNVVSWSGLIYGYVQLGEDDEALRLFKRFLVEEENEGVNDFTLSSVLRVCGGSTFLQMGKQIHGLSFKTSFDSSCFVASSLISLYSKCGVVEEAYDVFEEVTVRNLGMWNAMLIACAQHAHTNKTFELFDKMKSVGGVKANFITFLCVLYACSHAGLVEKGKYYFELMKDYGIEPGTQHYSTLVDLLGRAGKLNEAVKVIEEMPMEPTESVLGALLTGCRIHGNTELASYVADRVSELGSVSSGLQVLLSNAYAAAGRWEEAARARKTLRDKGIKKETGLSWVEEGNRVHTFAAGDRSHAKTLEIYDKLEELGEEMEKAGYVADTSFVLREVDGEEKSRSIKYHSERLAIAFGLITFPQGQPIRVMKNLRVCGDCHTAIKFISKCTGRVIIVRDNNRFHRFEDGKCTCGDYW* 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1526 608 PANTHER BNAA10G28390D PROTEIN 11 551 - -
Tpr6g1526 608 Pfam E motif 418 480 IPR046848 -
Tpr6g1526 608 Gene3D Tetratricopeptide repeat domain 154 251 IPR011990 GO:0005515
Tpr6g1526 608 Gene3D Tetratricopeptide repeat domain 10 153 IPR011990 GO:0005515
Tpr6g1526 608 Gene3D Tetratricopeptide repeat domain 272 519 IPR011990 GO:0005515
Tpr6g1526 608 TIGRFAM PPR: pentatricopeptide repeat domain 100 132 IPR002885 -
Tpr6g1526 608 TIGRFAM PPR: pentatricopeptide repeat domain 339 372 IPR002885 -
Tpr6g1526 608 TIGRFAM PPR: pentatricopeptide repeat domain 376 399 IPR002885 -
Tpr6g1526 608 TIGRFAM PPR: pentatricopeptide repeat domain 304 332 IPR002885 -
Tpr6g1526 608 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 97 131 IPR002885 -
Tpr6g1526 608 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 372 406 IPR002885 -
Tpr6g1526 608 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 337 371 IPR002885 -
Tpr6g1526 608 Pfam Pentacotripeptide-repeat region of PRORP 308 400 IPR033443 -
Tpr6g1526 608 PANTHER OS01G0913400 PROTEIN-RELATED 11 551 - -
Tpr6g1526 608 Pfam E+ motif 485 512 IPR046849 -
Tpr6g1526 608 Pfam DYW family of nucleic acid deaminases 516 608 IPR032867 GO:0008270
Tpr6g1526 608 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 301 335 IPR002885 -
Tpr6g1526 608 Pfam PPR repeat 200 224 IPR002885 -
Tpr6g1526 608 Pfam PPR repeat 275 299 IPR002885 -
Tpr6g1526 608 Pfam PPR repeat 172 198 IPR002885 -
Tpr6g1526 608 Pfam PPR repeat 100 129 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1526 Tpr-Chr6 16540630 16542823 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1526 47 608 Glycoside Hydrolase AT3G49170 36.189 1.32e-120 375
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1526 - - lang:109356914 926.006
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g1526 6 16540630 16542823 Tpr6g1526 6 16540630 16542823 ECH