Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1518 ATGGCTCTTCTAAGACATTTCCTCATCTCATTATTCACTATCATCATCATCATTTCTTTTGTTGCTTGTAATAGCAACTTGCAAGAGGACCCACTTATTACTACATACGTTGATGATTCACCTTCCAATGATGATGCTGACACATTATTATTCAAGAACTTCATCAACCAAAACACAAATAATATTTTGAGATTTGATGCCACTTCACGTTCACTAGAAATTGTTAATGTCAATGATTATGGAGCTAAAGGGAATGGTTATACTGATGATACACAGGCATTCAAGAAGGCTTGGGAAGTAGTATGTTCTTCAGGAGAAGCAATTTTTGTGGTACCTGAAGATAATAATTATCTACTCAAACCAATCAGATTCTCTGGTCCATGTAAATCTAACATAACAGTCCAGATATCTGGAAGTCTTGAAGCATCAGATGATCGATCAGATTATAGTGAAGATCAAAGACATTGGCTTATATTTCACAATGTTCAAAAACTATTAGTTAATGGTGGTGGAACCATCAATGGAAAAGGAAGTATATGGTGGAAAAACTCATGTAAAAGGAACAAAAAGAAACCTTGCAAGGATGCCCCAACGGCTCTAACATTTGATAATTGTGAGGACTTGATAGTTGAGAATTTGAAGATAGAAAATGCGCAACAAATCCATGTTTCATTCCAAGATTCGATTAACGTTAAAGCTTCCGATCTCAACGTGTCATCACCAGAGGATAGTCCTAACACCGATGGAATTCATGTCACCAATACCCAAAACATCAAAATCTCTAGCTCTATCATAGGAACTGGTGACGATTGTATATCAATTGTACATGGATCTAAGAATGTAGAAGCCACAAACATAACTTGTGGACCAGGCCATGGCATCAGTATTGGAAGCTTGGGGGCTGGAAAATCAAAAGAATTTGTTTCTGAAGTAACAGTGAATGGAGCTAAGATTTCTGGAACTAAAAATGGAGTTAGAATTAAAACATGGCCGGGAGGTTCAGGAAGTGCCACCAACATAAAATTTCTGAACATTGAAATGGACAATGTGACCAATCCCATAATAATAGACCAGAATTACTGTGACAAGAAAAAAAAGCCATGCAAAAAATCGGACTCTGCTGTCCAAATTAGCAATGTGTTGTACCAGAATATAATAGGTAAAAGTGCTTCTGATGTAGCTGTGAAGTTTGATTGCAGTGAGAAATTTCCATGTAAGGAGATAGCATTGGAGAACATAGACTTGCAATATGATGAAGGAGAAGATGCTAAGGCTTTATGCAACAGTGTTGAATTGTTTTACACAGGACATGTTACCCCTCGCTGCTACTCATAG 1335 0.37 MALLRHFLISLFTIIIIISFVACNSNLQEDPLITTYVDDSPSNDDADTLLFKNFINQNTNNILRFDATSRSLEIVNVNDYGAKGNGYTDDTQAFKKAWEVVCSSGEAIFVVPEDNNYLLKPIRFSGPCKSNITVQISGSLEASDDRSDYSEDQRHWLIFHNVQKLLVNGGGTINGKGSIWWKNSCKRNKKKPCKDAPTALTFDNCEDLIVENLKIENAQQIHVSFQDSINVKASDLNVSSPEDSPNTDGIHVTNTQNIKISSSIIGTGDDCISIVHGSKNVEATNITCGPGHGISIGSLGAGKSKEFVSEVTVNGAKISGTKNGVRIKTWPGGSGSATNIKFLNIEMDNVTNPIIIDQNYCDKKKKPCKKSDSAVQISNVLYQNIIGKSASDVAVKFDCSEKFPCKEIALENIDLQYDEGEDAKALCNSVELFYTGHVTPRCYS* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1518 444 PANTHER ENDO POLYGALACTURONASE 11 443 - -
Tpr6g1518 444 ProSitePatterns Polygalacturonase active site. 285 298 IPR000743 GO:0004650|GO:0005975
Tpr6g1518 444 PANTHER - 11 443 - -
Tpr6g1518 444 SUPERFAMILY Pectin lyase-like 72 443 IPR011050 -
Tpr6g1518 444 Pfam Glycosyl hydrolases family 28 108 431 IPR000743 GO:0004650|GO:0005975
Tpr6g1518 444 SMART pbh1 205 254 IPR006626 -
Tpr6g1518 444 SMART pbh1 255 276 IPR006626 -
Tpr6g1518 444 SMART pbh1 337 358 IPR006626 -
Tpr6g1518 444 SMART pbh1 308 329 IPR006626 -
Tpr6g1518 444 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 23 - -
Tpr6g1518 444 Gene3D - 48 440 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1518 Tpr-Chr6 16410911 16414588 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1518 5 442 Glycoside Hydrolase AT3G57510 50.112 6.56e-146 421
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1518 K01184 - gmx:100797601 662.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g1518 6 16410911 16414588 Tpr6g1518 6 16410911 16414588 ECH