Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1496 ATGTCTAGCTCTACAAAAGTGTTGGAACCAGCATTCCAAGGAGTAGGCCAAAAAGTAGGGACTGAAATATGGAGGATTGAGAATTTTCAGCCAGTTCCATTTCCGAAATCTGATTATGGGAAATTCTACATGGGAGATTCTTACATCATCTTGCAGACAACACAAGGCAAAGGAGGCAGTTATTTGTATGATATTCACTTCTGGATTGGAAAGGATACAAGTCAGGATGAGGCTGGAACTGCAGCCATTAAAACTATTGAACTTGATGCATCCCTTGGTGGACGTGCAGTGCAGCATAGGGAAATCCAAGGGCATGAATCTGACAAGTTTTTGTCATACTTTAAGCCATGTATTATACCATTAGAAGGAGGTGTTGCATCTGGTTTCAAAAAACCAGAAGAGGAGGTGTTTGAAACACGTTTGTATGTATGCAAAGGAAAACGAGTTGTTAGAATAAAACAGGTCCCTTTTGCACGTTCTTCGCTGAATCATGATGATGTATTCATCTTAGACACTAAGGATAAGATTTATCAATTCAATGGAGCAAATTCCAATATTCAAGAAAGAGCCAAGGCTTTAGAAGTTATTCAGTTGTTGAAGGAAAAGTATCATGAAGGGACATCCAATGTTGCAATTGTTGATGATGGAAAGTTGGATACTGAGTCAGACTCAGGTGAATTTTGGGTCCTCTTTGGTGGTTTTGCTCCCATTGGAAAGAAAGTAATCAGTGAAGATGATATTGTTCCAGAGACAACTCCTGCTAAACTATATAGTATTGCTGATGGTGAGGTCAAGTCAGTGGAAGGTGAACTTTCTAAGTCACTGTTGGAGAACAGCAAATGCTATTTATTGGACTGTGGTGCTGAGATATTTGTCTGGGTTGGCCGTGTAACACAAGTTGATGAAAGAAAAGCAGCATGTCAAGCTGCTGAGGACTTTGTTGCAAGTCAAAAAAGGCCAAAAGCTACAAGAATAACAAGGGTTATTCAAGGTTATGAGACACATTCATTTAAATCCAATTTTGATTCTTGGCCATCTGGCTCTGCTTCTACTGCTGGTGCTGAGGAAGGAAGAGGAAAAGTTGCAGCTTTGCTGAAGCAACAAGGTATCGGTGTCAAGGGAGCGGCAAAGAGTGTCCCAGTTAATGAGGAAATTCCACCTTTGCTTGAAGGAGGTGGAAAATTGGAGGTATGGATAATCAATGGAAGTGCTAAGACTCCATTACCTAAGGAGGATATTGGTAAATTTTATGGTGGAGATTGTTACATAGTGTTGTACACTTATCACTCTGGTGAGAGGAAGGAAGACTACTTCTTGTGCTCTTGGTTTGGAAAAGACAGCATTGAGGAGGACCAGAAGATGGCTACTCGGTTGGCAACTACAATGTCCAACTCACTAAAGGGTAGACCTGTTCAGGGACGCATATTTGATGGTAAAGAATCACCACAGTTTGTTGCCCTTTTCCAACCTATGGTGGTCCTCAAGGGTGGTGTGAGCTCTGGCTACAAAAAATTAATTGCAGATAAAGGTTTGTCAGATGAGACATACACAGCAGAGGGTATTGCTCTTATTAGGATTTCTGGAACATCCATTCACAATAATAAAACAATGCAAGTTAATGCAGTAGCATCTTCGTTGAATTCTACCGAGTGTTTTCTTCTGCAATCTGGCTCAACAGTTTTTAATTGGCATGGCAATCAATCTTCCATTGAGCAGCATCAACTTGCAGCAACAGTTGCTGAATTTTTAAGGCCAGGAGTTGCTTTAAAGCATGCAAAAGAAGGAACAGAAACCTCAGCTTTTTGGTTTGCAGTTGGAGGAAAACAAAGTATCACTAGCAAAAAAGTCACTAATGACATTGTCAGAGACCCACATTTGTTCACTTTATCATTTAATAAAGCGGGAAAGTTACAGGAAGAAGAGATTTTCAACTTTGGCCAGGATGATCTGTTAACAGAAGATATCCTCATTCTTGACACACATGCAGAAGTGTTTGTTTGGATCGGTCAGAATGTGGACGCTAAAGAAAAGCAAAATGCTTTTGAAATTGCCCAGAAATACATAGAAAAGGCTGGATCTCTGGAGGGACTATCTCCTCATGTACCACTATATAAAGTAACAGAAGGGAATGAACCTTGCTTTTTCACAACATACTTTTCTTGGGATCATGCAAAAGCTACGGTTCAAGGGAACTCATTCATGAAAAAGATGGCCTTACTATTTGGAATTGGTCATTCTGTAGAGGAAAAATCTAATAATGGTTCAAGTCAAGGGGGACCAAGACAAAGAGCAGAAGCTTTGGCTGCTTTAAATAATGCATTCAATTCATCTCCTGAGACACCACCCAGTGCGGATAAATTGAATAGCCTAAATCAAGGAGGACATAGGCAAAGGGCTGAAGCTTTAGCTGCCTTAAACTCTGCATTTAGTTCATCATCTGCAACTAAACCTGTTACACCTAGAAAATCTCCAAGAGGGCAAGGATCACAAAGAGCAGCAGCAGTTGCTGCTCTTTCTAATGTTCTCACTGCTGAAAAGAAGACACATTCACCTGACAGTTCTCCTGTGGCAACCAGTAGTCCTGTTGTGGAAAGTAGCACTTTTGATGCTAAAAGTGAAAGTGTCCCTTCTGAATCGGAAGGTCGTGAAGAAGTTACCGAAACCAAGGAGACCGAGGAACCTGCTTCTGAAACTGGTAGCAATGGAAATTCGGAATCAAAACAAGAAAATGTGGAGGATGGCAATGATAGTCAAAATAGTCAACGTGTCTTCAGTTATGAGCAATTAAAAGCTAAATCTGGGAGTCATCTATCTGGGGTTGATCTTCAACGCAGGGAGGCTTATCTGTCGGACCAAGAGTTTGAAACTGTATTTGCAATGACAAAAGAAGCATTCAATAAGTTACCAAAATGGAAGCAAGACATGCTGAAAAGAAAATTTGATTTGTTCTAG 2952 0.4051 MSSSTKVLEPAFQGVGQKVGTEIWRIENFQPVPFPKSDYGKFYMGDSYIILQTTQGKGGSYLYDIHFWIGKDTSQDEAGTAAIKTIELDASLGGRAVQHREIQGHESDKFLSYFKPCIIPLEGGVASGFKKPEEEVFETRLYVCKGKRVVRIKQVPFARSSLNHDDVFILDTKDKIYQFNGANSNIQERAKALEVIQLLKEKYHEGTSNVAIVDDGKLDTESDSGEFWVLFGGFAPIGKKVISEDDIVPETTPAKLYSIADGEVKSVEGELSKSLLENSKCYLLDCGAEIFVWVGRVTQVDERKAACQAAEDFVASQKRPKATRITRVIQGYETHSFKSNFDSWPSGSASTAGAEEGRGKVAALLKQQGIGVKGAAKSVPVNEEIPPLLEGGGKLEVWIINGSAKTPLPKEDIGKFYGGDCYIVLYTYHSGERKEDYFLCSWFGKDSIEEDQKMATRLATTMSNSLKGRPVQGRIFDGKESPQFVALFQPMVVLKGGVSSGYKKLIADKGLSDETYTAEGIALIRISGTSIHNNKTMQVNAVASSLNSTECFLLQSGSTVFNWHGNQSSIEQHQLAATVAEFLRPGVALKHAKEGTETSAFWFAVGGKQSITSKKVTNDIVRDPHLFTLSFNKAGKLQEEEIFNFGQDDLLTEDILILDTHAEVFVWIGQNVDAKEKQNAFEIAQKYIEKAGSLEGLSPHVPLYKVTEGNEPCFFTTYFSWDHAKATVQGNSFMKKMALLFGIGHSVEEKSNNGSSQGGPRQRAEALAALNNAFNSSPETPPSADKLNSLNQGGHRQRAEALAALNSAFSSSSATKPVTPRKSPRGQGSQRAAAVAALSNVLTAEKKTHSPDSSPVATSSPVVESSTFDAKSESVPSESEGREEVTETKETEEPASETGSNGNSESKQENVEDGNDSQNSQRVFSYEQLKAKSGSHLSGVDLQRREAYLSDQEFETVFAMTKEAFNKLPKWKQDMLKRKFDLF* 984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1496 983 CDD gelsolin_S5_like 520 610 - -
Tpr6g1496 983 Gene3D Severin 519 613 IPR029006 -
Tpr6g1496 983 Gene3D Severin 6 140 IPR029006 -
Tpr6g1496 983 Gene3D Severin 390 518 IPR029006 -
Tpr6g1496 983 CDD gelsolin_S4_like 387 488 - -
Tpr6g1496 983 Pfam Villin headpiece domain 948 983 IPR003128 GO:0003779|GO:0007010
Tpr6g1496 983 SUPERFAMILY Actin depolymerizing proteins 597 720 - -
Tpr6g1496 983 Gene3D Severin 244 358 IPR029006 -
Tpr6g1496 983 SUPERFAMILY Actin depolymerizing proteins 511 614 - -
Tpr6g1496 983 MobiDBLite consensus disorder prediction 807 924 - -
Tpr6g1496 983 MobiDBLite consensus disorder prediction 843 874 - -
Tpr6g1496 983 CDD gelsolin_S6_like 623 722 - -
Tpr6g1496 983 MobiDBLite consensus disorder prediction 875 894 - -
Tpr6g1496 983 SMART VILL_6 519 608 IPR007122 GO:0051015
Tpr6g1496 983 SMART VILL_6 624 721 IPR007122 GO:0051015
Tpr6g1496 983 SMART VILL_6 19 117 IPR007122 GO:0051015
Tpr6g1496 983 SMART VILL_6 393 491 IPR007122 GO:0051015
Tpr6g1496 983 SMART VILL_6 137 234 IPR007122 GO:0051015
Tpr6g1496 983 SMART VILL_6 251 344 IPR007122 GO:0051015
Tpr6g1496 983 Gene3D Severin 141 236 IPR029006 -
Tpr6g1496 983 SUPERFAMILY Actin depolymerizing proteins 129 237 - -
Tpr6g1496 983 PANTHER VILLIN-3-LIKE ISOFORM X1 1 983 - -
Tpr6g1496 983 SUPERFAMILY Actin depolymerizing proteins 223 345 - -
Tpr6g1496 983 Gene3D Severin 617 738 IPR029006 -
Tpr6g1496 983 PRINTS Gelsolin family signature 323 344 IPR007122 GO:0051015
Tpr6g1496 983 PRINTS Gelsolin family signature 412 428 IPR007122 GO:0051015
Tpr6g1496 983 PRINTS Gelsolin family signature 438 456 IPR007122 GO:0051015
Tpr6g1496 983 PRINTS Gelsolin family signature 471 491 IPR007122 GO:0051015
Tpr6g1496 983 PRINTS Gelsolin family signature 534 554 IPR007122 GO:0051015
Tpr6g1496 983 PRINTS Gelsolin family signature 594 613 IPR007122 GO:0051015
Tpr6g1496 983 PRINTS Gelsolin family signature 647 669 IPR007122 GO:0051015
Tpr6g1496 983 PRINTS Gelsolin family signature 676 695 IPR007122 GO:0051015
Tpr6g1496 983 SUPERFAMILY Actin depolymerizing proteins 9 147 - -
Tpr6g1496 983 SMART VHP_1 948 983 IPR003128 GO:0003779|GO:0007010
Tpr6g1496 983 SUPERFAMILY Actin depolymerizing proteins 384 529 - -
Tpr6g1496 983 CDD gelsolin_S3_like 254 343 - -
Tpr6g1496 983 ProSiteProfiles Headpiece (HP) domain profile. 918 983 IPR003128 GO:0003779|GO:0007010
Tpr6g1496 983 MobiDBLite consensus disorder prediction 895 924 - -
Tpr6g1496 983 CDD gelsolin_S1_like 12 124 - -
Tpr6g1496 983 MobiDBLite consensus disorder prediction 807 826 - -
Tpr6g1496 983 Pfam Gelsolin repeat 406 484 IPR007123 -
Tpr6g1496 983 Pfam Gelsolin repeat 537 584 IPR007123 -
Tpr6g1496 983 Pfam Gelsolin repeat 150 205 IPR007123 -
Tpr6g1496 983 Pfam Gelsolin repeat 267 337 IPR007123 -
Tpr6g1496 983 Pfam Gelsolin repeat 29 111 IPR007123 -
Tpr6g1496 983 Pfam Gelsolin repeat 644 715 IPR007123 -
Tpr6g1496 983 CDD gelsolin_S2_like 138 232 - -
Tpr6g1496 983 Gene3D Villin headpiece domain 903 983 IPR036886 GO:0003779|GO:0007010
Tpr6g1496 983 PANTHER VILLIN 1 983 IPR007122 GO:0051015
Tpr6g1496 983 SUPERFAMILY VHP, Villin headpiece domain 918 983 IPR036886 GO:0003779|GO:0007010
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1496 Tpr-Chr6 16203665 16215611 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1496 - - gmx:100787208 1616.28