Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1427 ATGAAGTTCATTAACCCTAAAAACCTCTCTCCCAAACGTCTCTTCCGTTCCAAAAAGGAAAAATCCTCAGTCTCAAGATCCGACCCACCTTCATTCGGGTCAGCATCTTCATCCGATGAATCCACTCACAAAACCGTTGCTGGTGGCTCACAAACACCTACCAGCGTCCTTCCGGAAGACTGGTCTGATGTCAACGTCGACGTTCAGTGGGAGCTTGCTCAAGCTTTTCGTTTAATCGACCGAGATAACGACGGCGTCGTTTCGCGTCAAGAACTCCAAGCAGTTCTCACGCGCCTCGGTGCGCGTCCTCCTAGTTCCGAAGAAATCGAGATGATGCTTAGCGAAGTGGATAGCGATGGTAGAGGCTTCATTAGCGTGGAAACGATCATGAACCGGATTAGCTCCGGTTCTGGATCGGGTAACGGATCCGGATCGGGATCCGGTTCGGGTTCGGATCCGGAGGAAGAACTTAGAGAAGCGTTTGAGGTATTTGATACGGATCGAGATGGGAGAATCTCGGCGGATGAATTGTTGAGGGTTTTTAGAGCGATTGGGGATGAACGGTGCACGTTAGAAGAGTGTAGGCGTATGATAGCAGGTGTTGATAAAAACGGGGATGGGTTTGTGTGTTTTGAAGAGTTTTCTGTTATGATGGAGTTGCAACGGTGA 669 0.4948 MKFINPKNLSPKRLFRSKKEKSSVSRSDPPSFGSASSSDESTHKTVAGGSQTPTSVLPEDWSDVNVDVQWELAQAFRLIDRDNDGVVSRQELQAVLTRLGARPPSSEEIEMMLSEVDSDGRGFISVETIMNRISSGSGSGNGSGSGSGSGSDPEEELREAFEVFDTDRDGRISADELLRVFRAIGDERCTLEECRRMIAGVDKNGDGFVCFEEFSVMMELQR* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1427 222 ProSiteProfiles EF-hand calcium-binding domain profile. 152 187 IPR002048 GO:0005509
Tpr6g1427 222 PANTHER CALCIUM-BINDING PROTEIN CML35-RELATED 7 220 - -
Tpr6g1427 222 CDD EFh 156 218 IPR002048 GO:0005509
Tpr6g1427 222 ProSiteProfiles EF-hand calcium-binding domain profile. 189 222 IPR002048 GO:0005509
Tpr6g1427 222 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 7 220 - -
Tpr6g1427 222 SUPERFAMILY EF-hand 61 218 IPR011992 -
Tpr6g1427 222 ProSitePatterns EF-hand calcium-binding domain. 202 214 IPR018247 -
Tpr6g1427 222 ProSiteProfiles EF-hand calcium-binding domain profile. 71 102 IPR002048 GO:0005509
Tpr6g1427 222 MobiDBLite consensus disorder prediction 133 150 - -
Tpr6g1427 222 ProSitePatterns EF-hand calcium-binding domain. 80 92 IPR018247 -
Tpr6g1427 222 MobiDBLite consensus disorder prediction 1 60 - -
Tpr6g1427 222 Gene3D - 67 135 - -
Tpr6g1427 222 Pfam EF-hand domain pair 72 127 IPR002048 GO:0005509
Tpr6g1427 222 Pfam EF-hand domain pair 154 218 IPR002048 GO:0005509
Tpr6g1427 222 Gene3D - 147 222 - -
Tpr6g1427 222 MobiDBLite consensus disorder prediction 133 156 - -
Tpr6g1427 222 MobiDBLite consensus disorder prediction 26 59 - -
Tpr6g1427 222 CDD EFh 71 127 IPR002048 GO:0005509
Tpr6g1427 222 ProSitePatterns EF-hand calcium-binding domain. 165 177 IPR018247 -
Tpr6g1427 222 SMART efh_1 156 184 IPR002048 GO:0005509
Tpr6g1427 222 SMART efh_1 108 136 IPR002048 GO:0005509
Tpr6g1427 222 SMART efh_1 71 99 IPR002048 GO:0005509
Tpr6g1427 222 SMART efh_1 193 221 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1427 Tpr-Chr6 15410221 15411217 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1427 8 222 EF-hand Containing Proteins AT3G10190 49.550 3.19e-61 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1427 K13448 - gmx:100815559 244.202
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g1427 6 15410221 15411217 Tpr6g1427 6 15410221 15411217 ECH