Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1404 ATGATAAAAATGGATACTTTACTCAAAACACCAAACAAGCTTCAATTTTTGCACCCACTTCATGGTTATTCAGAAAAATTGAGCAATTATTCACTTTCCTATAAGTTTCAAAACCATGAACTTAGATTTGGTTCAAAGAAAAAACCAGTTTTGAGGGCTAGTAGCAGTGCCCTTTTGGAGCTTGTTCCTGAATTTAAGAAAGAGAATTTGGATTTTGAACTTCCTTTGTATGATTCATCAAAGGGAACTGTTGTGGATCTTGCAGTTGTGGGAGGTGGTCCTGCAGGGCTTGCAGTAGCACAGCAAGTTTCCGAAGCAGGGCTTTCTGTTTGCGCTATTGATCCGAACCCTAGATTGATTTGGCCTAATAATTATGGTGTTTGGGTGGATGAATTTGAGGCAATGGATTTACTTGATTGCCTTGATAAAACTTGGTCTGGTGCTGTTGTTTACATCGACGATAAAACGAAAAAGGATCTTGATAGACCTTATGGTAGGGTTAATAGGAAGCTTTTGAAGTCAAAGATGCTACAAAAATGCATATCAAATGGTGTGAAGTTTCATCAAGCTAAAGTTATCAAGGTTATTCACGAGGAATCGAAATCGTTGTTGATTTGTAATGATGGTGTCACGGTTCAGGCTACTGTGGTTCTTGATGCTACTGGCTTTTCAAAATGTCTGGTCCAGTATGATAAACCGTATAATCCGGGTTACCAAGTTGCGTATGGGATTTTGGCTGAGGTTGATGAACATCCGTTTGATGTTGATAAAATGCTTTTTATGGACTGGAGAGATTCACATCTAGACAATGATATGAAGCTCAAGGAGAGAAATAGTAAAATACCTACTTTTCTATATGCAATGCCCTTTTCATCCACAAAGATATTTCTCGAAGAAACCTCGCTTGTTGCTCGCCCTGGGTTACGGATGGATGATATACAAGATAGAATGGTTGCTAGGTTGAAACACTTGGGTATCAATGTGAAAAGCATTGAAGAAGATGAACAGTGTGTCATTCCAATGGGTGGCCCTCTCCCGGTTCTCCCTCAGAGAGTTGTTGGAATCGGTGGTACAGCTGGGATGGTGCATCCTTCTACCGGGTATATGGTAGCAAGAACCCTAGCTGCAGCTCCTATTGTTGCTAATGCTATTGTTCAGTATCTTGGTTCTGATAGAGGCCTTTTAGGAGACGAAATATCTGCACAAGTATGGAAAGACTTATGGCCGATCGAAAGAAGGCGACAAAGGGAGTTCTTCTGTTTTGGTATGGACGTCTTACTCAAGCTTGATTTACCTGGCACAAGAAGATTTTTCAATGCGTTTTTTAATCTGGAACCTTATTATTGGCATGGATTCTTATCATCAAGACTGTATCTTCCTGAGCTGTTTACTTTTGGATTATCTCTATTTTCTTATGCCTCAAATACATCTAGGCTAGAGATTATGGCAAAGGGAACTCTTCCTTTGGTAAATATGGTCAACAACTTGATAAAAGATAAAGAATAA 1506 0.3944 MIKMDTLLKTPNKLQFLHPLHGYSEKLSNYSLSYKFQNHELRFGSKKKPVLRASSSALLELVPEFKKENLDFELPLYDSSKGTVVDLAVVGGGPAGLAVAQQVSEAGLSVCAIDPNPRLIWPNNYGVWVDEFEAMDLLDCLDKTWSGAVVYIDDKTKKDLDRPYGRVNRKLLKSKMLQKCISNGVKFHQAKVIKVIHEESKSLLICNDGVTVQATVVLDATGFSKCLVQYDKPYNPGYQVAYGILAEVDEHPFDVDKMLFMDWRDSHLDNDMKLKERNSKIPTFLYAMPFSSTKIFLEETSLVARPGLRMDDIQDRMVARLKHLGINVKSIEEDEQCVIPMGGPLPVLPQRVVGIGGTAGMVHPSTGYMVARTLAAAPIVANAIVQYLGSDRGLLGDEISAQVWKDLWPIERRRQREFFCFGMDVLLKLDLPGTRRFFNAFFNLEPYYWHGFLSSRLYLPELFTFGLSLFSYASNTSRLEIMAKGTLPLVNMVNNLIKDKE* 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1404 501 SUPERFAMILY FAD/NAD(P)-binding domain 84 467 IPR036188 -
Tpr6g1404 501 Gene3D - 83 426 IPR036188 -
Tpr6g1404 501 TIGRFAM carotene-cycl: lycopene cyclase family protein 86 481 IPR010108 GO:0016117|GO:0016705
Tpr6g1404 501 PANTHER LYCOPENE BETA CYCLASE, CHLOROPLASTIC 9 501 - -
Tpr6g1404 501 Pfam Lycopene cyclase protein 86 478 - -
Tpr6g1404 501 PANTHER UBIQUINONE BIOSYNTHESIS MONOOXYGENASE COQ6, MITOCHONDRIAL 9 501 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1404 Tpr-Chr6 15156771 15158744 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1404 K06443 - gmx:100810895 904.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g1404 6 15156771 15158744 Tpr6g1404 6 15156771 15158744 ECH