Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1388 ATGTTAATGGCACCTATGCTTCTACGCCGTCTTCCTCTCCTTCGTTTCATGTCTTCTCGCAATTTCTTCACCCCTTCTTCCTTCCGTCTTCTTTCTTATCCTCATTCTTCTTCATCACTCCCTCTTTCTACTCTCTCCAAACCCAGGAAGAGGTTTTCTCTTAAGAAATTTTCAGTTCCAAGTTTGGTGTCAAATGCAGTCACTCCAAGGGCATATATGTCTTCTTTATCAGCAGCTGAAGATATTCACAAGAGTGAAAGTTCTAAAGCTTATGGTTCTGATCAAATTCAGGTGCTTGAAGGGTTGGACCCTGTAAGAAAAAGGCCCGGCATGTATATCGGAAGCACTGGTCCACGCGGGTTGCACCATTTGGTCTATGAAATTTTGGATAATGCTGTTGATGAAGCTCAAGCTGGATTTGCTTCCAAGATTGATGTTGTTTTGCATGCAGATGATTCTGTGAGCATAACTGACAACGGTCGTGGGATTCCGACAGACATGCATCCAACTACAAAGAAATCTGCCTTGGAGACAGTCTTGACGATCTTGCATGCTGGTGGAAAATTTGGCGGCATCAATAGCGGCTACTCTGTTTCTGGAGGTTTACATGGTGTTGGTTTATCTGTTGTTAATGCCTTGTCTGAGGCACTAGAAGTAACAGTTTGGCGTGAAGGGTTAGAATACACACAAACATATTCTCGCGGGAAGCCTGTGACAACTCTGAATTGCGCCATGCTTCCTTTTGAAAATAAAAATCGTCAAGGAACACGTATCAAGTTTTGGCCTGACAAAGAAGTATTCACCACCGCTATTCAGTTTGAGTACAATACAATAGCTGGGCGCATTAGGGAGTTGGCTTTCCTTAACCCAAAGCTTACGATTGTGCTTCAGAAAGAGGACAATGATCCAGAAAAGGTCCAATTTAATGAGTATTTCTATGCTGGGGGATTGGCTGAATATGTGAAATGGCTTAACACAGATAAGAAAGCTGTTCATGATGTTCTGAGTTTCAGAAAAGAAACAGATGGAATCACAGTTGATATAGCTTTGCAATGGTGTGAAGATGCATACTCGGATACAATACTAGGATATGCTAATAGTATACGCACTGTTGATGGTGGCACCCATATCGATGGTATGAAGGCTTCTCTAACAAGAACACTAAATAGTCTTGGAAAGAAATCAAAAGTTATCAAGGAAAAGGATATTACTTTAAGTGGCGAGCATGTGAGAGAAGGTTTAACATGTGTTGTCTCAGTCAAGGTCCCAAATCCAGAGTTTGAAGGACAAACAAAGACAAGGTTGGGAAATCCAGAGGTGCGGAAAGTGGTTGATCAATCTATTCAAGAATATCTTATTGAGTATTTGGAACTGCATCCAGATGTTCTTGACTCGGTGCTCTCCAAAGCTCTTAATGCTTTCAAGGCAGCTTTGGCTGCAAAAAGAGCAAGGGAGTTGGTGAGACAAAAGAGTGTATTGAGATCTTCATCTCTTCCGGGCAAACTTGCGGATTGTTCATCATCAAATCCTGAAGACTGTGAAATTTTTATAGTTGAAGGTGATTCAGCTGGGGGAAGTGCTAAGCAAGGTCGTGATCGGCGCTTCCAGGCTATTCTCCCTTTGAGGGGTAAAATTCTGAATATTGAAAGGAGGGATGAAGCAGCAATGTACAAAAATGAAGAGATCCAAAATTTAATCCTTGGTCTTGGTCTCGGAGTGAAGGGAGAGGATTTTAAAAAGGATGCACTCCGATATCACAAGATTATTATTTTGACTGATGCTGATGTGGATGGTGCCCACATCCGAACTCTGCTACTGACATTTTTTTATAGATATCAGAGAGCTTTGTTTGATGAAGGTTACATATATGTTGGTGTTCCACCACTTTACAAGGTTGTAAGGGGAAAACAAGTGCACTATTGTTACGACGAAGCTGATCTTAAAAAACTTAAGAGCTCATTCTCTCCTAATGCATCATACAACATGCAAAGGTTCAAAGGGCTGGGAGAGATGATGCCTTTACAACTATGGGAGACAACCATGGATCCAGACCAGAGGTTGTTGAAGAAGTTGACGGTTGAGGATGCAGCTGAAGCAAATATCGTTTTTTCCTCCCTTATGGGTGCTCGGGTGGATGTTCGGAAGGAGCTGATACAAAATGCTGCAAACATGATTAATCTTGATCAGCTAGATATTTGA 2199 0.4175 MLMAPMLLRRLPLLRFMSSRNFFTPSSFRLLSYPHSSSSLPLSTLSKPRKRFSLKKFSVPSLVSNAVTPRAYMSSLSAAEDIHKSESSKAYGSDQIQVLEGLDPVRKRPGMYIGSTGPRGLHHLVYEILDNAVDEAQAGFASKIDVVLHADDSVSITDNGRGIPTDMHPTTKKSALETVLTILHAGGKFGGINSGYSVSGGLHGVGLSVVNALSEALEVTVWREGLEYTQTYSRGKPVTTLNCAMLPFENKNRQGTRIKFWPDKEVFTTAIQFEYNTIAGRIRELAFLNPKLTIVLQKEDNDPEKVQFNEYFYAGGLAEYVKWLNTDKKAVHDVLSFRKETDGITVDIALQWCEDAYSDTILGYANSIRTVDGGTHIDGMKASLTRTLNSLGKKSKVIKEKDITLSGEHVREGLTCVVSVKVPNPEFEGQTKTRLGNPEVRKVVDQSIQEYLIEYLELHPDVLDSVLSKALNAFKAALAAKRARELVRQKSVLRSSSLPGKLADCSSSNPEDCEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIERRDEAAMYKNEEIQNLILGLGLGVKGEDFKKDALRYHKIIILTDADVDGAHIRTLLLTFFYRYQRALFDEGYIYVGVPPLYKVVRGKQVHYCYDEADLKKLKSSFSPNASYNMQRFKGLGEMMPLQLWETTMDPDQRLLKKLTVEDAAEANIVFSSLMGARVDVRKELIQNAANMINLDQLDI* 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1388 732 Gene3D - 494 732 IPR013759 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Tpr6g1388 732 ProSitePatterns DNA topoisomerase II signature. 517 525 IPR018522 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Tpr6g1388 732 Gene3D - 314 493 IPR014721 -
Tpr6g1388 732 CDD TopoII_Trans_DNA_gyrase 315 469 - -
Tpr6g1388 732 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 118 265 IPR003594 -
Tpr6g1388 732 PRINTS DNA gyrase subunit B signature 91 101 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Tpr6g1388 732 PRINTS DNA gyrase subunit B signature 272 287 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Tpr6g1388 732 PRINTS DNA gyrase subunit B signature 287 300 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Tpr6g1388 732 PRINTS DNA gyrase subunit B signature 315 337 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Tpr6g1388 732 PRINTS DNA gyrase subunit B signature 407 423 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Tpr6g1388 732 PRINTS DNA gyrase subunit B signature 455 469 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Tpr6g1388 732 PRINTS DNA gyrase subunit B signature 469 489 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Tpr6g1388 732 PRINTS DNA gyrase subunit B signature 565 574 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Tpr6g1388 732 PRINTS DNA gyrase subunit B signature 683 695 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Tpr6g1388 732 PRINTS DNA gyrase subunit B signature 699 715 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Tpr6g1388 732 Gene3D - 87 313 IPR036890 -
Tpr6g1388 732 Pfam Toprim domain 514 615 IPR006171 -
Tpr6g1388 732 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 91 305 IPR036890 -
Tpr6g1388 732 PANTHER DNA GYRASE SUBUNIT B 47 732 - -
Tpr6g1388 732 Pfam DNA gyrase B subunit, carboxyl terminus 658 719 IPR002288 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Tpr6g1388 732 CDD TOPRIM_TopoIIA_GyrB 513 627 IPR034160 -
Tpr6g1388 732 SMART topII5 120 723 IPR001241 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Tpr6g1388 732 Pfam DNA gyrase B 316 485 IPR013506 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Tpr6g1388 732 PANTHER DNA GYRASE/TOPOISOMERASE SUBUNIT B 47 732 - -
Tpr6g1388 732 SUPERFAMILY Ribosomal protein S5 domain 2-like 316 486 IPR020568 -
Tpr6g1388 732 ProSiteProfiles Toprim domain profile. 513 628 IPR006171 -
Tpr6g1388 732 TIGRFAM gyrB: DNA gyrase, B subunit 91 728 IPR011557 GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265
Tpr6g1388 732 PRINTS DNA topoisomerase II family signature 120 135 - -
Tpr6g1388 732 PRINTS DNA topoisomerase II family signature 155 168 - -
Tpr6g1388 732 PRINTS DNA topoisomerase II family signature 200 214 - -
Tpr6g1388 732 PRINTS DNA topoisomerase II family signature 363 376 - -
Tpr6g1388 732 PRINTS DNA topoisomerase II family signature 515 529 - -
Tpr6g1388 732 PRINTS DNA topoisomerase II family signature 582 598 - -
Tpr6g1388 732 PRINTS DNA topoisomerase II family signature 600 617 - -
Tpr6g1388 732 PRINTS DNA topoisomerase II family signature 620 632 - -
Tpr6g1388 732 PRINTS DNA topoisomerase II family signature 662 678 - -
Tpr6g1388 732 SUPERFAMILY Type II DNA topoisomerase 490 728 IPR013760 GO:0003918|GO:0005524
Tpr6g1388 732 CDD HATPase_GyrB-like 121 306 - -
Tpr6g1388 732 SMART HKATPase_4 116 266 IPR003594 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1388 K02470 - gmx:100807172 1201.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g1388 6 14924505 14933439 Tpr6g1388 6 14924505 14933439 ECH