Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1349 ATGGATTCATCGTTTGTCTCCAACGATGTTGTTTCTGGGTTCAAAGATAAGGAGTCAATGGTTGACCCTTTTTTGGTTGAGGCTCTTCAGAACCCTAGGCATCGTCTTACAATTCTGCGGATGGAGCTGGATATCCAGAAATTTATGAATAACGCTGATCAGCATCATTTTGAATTTCAACATTTCCCTTCTTCTTATCTCCGATTGGCTGCACATCGTGTTGCTCAACACTACGGCTTGCAAACAATGGTTCAAGACAATGGATTAGATGGCCAGAGTAAAATTTTGGTCAGAAAGTTACCTGAAAGCAAGTACCCTGTAGTTCGCTTATCTGAAATACCTGCAAAACAGTTGGACAATGAGAAATCTGAGCTGAAAAAAATCGTCATTCGACCTAGGCCTCATAACAGTGGTTTGAATGGAGCTAATGATTCCACAAAAAAAGGAAACCCATTGAGAAGTGTGGAAGAGAGGAAGGAGGAGTATGATCGGGCACGAGCACGTATCTTTAATGGCTCCACAAGCTTTGATTCAGTTGATACCTCATCCATGGTCCCAATAGATGGGAAAAGTTCTTCAATGAGCAAGGATGAGAATGAAACTAGCAAAATTGCCATGGCTGATCCAGAAAGATGCATCAATTTCAGGGATAATGGTTATCCTCGAGTTGCCATTATCAGAGATAGGGAAAAGGATCGAAGTGATCCAGATTATGATCGCAGCTATGGAAGGTATGCCAGGAGTTTATCAGCCTCTGCAATTAACTTGGTGCCTTTTAATTTGCCAAACGCTCAACCTTCATTTGCTCAGTATGAACCTACTTTCAATCCGTTGGTTCAGATGCAACAAACTCAGGCTTCAATTGGATATGGGCTTCCTTCAACCCCGATGATGAGTCCTTTTGTTACGCCGACTTTGAATCCGACATCTGGGGATGGTGCTTACCTACAGTGGCCAAGTCCTACAATGATGTATGCACATTCATATGACCAATTTAGACATGCTGTTTACCAGGCTCCATTTGGTCAACCTTTGAGCTTTGACTATTCACAGAACTATTAG 1062 0.4218 MDSSFVSNDVVSGFKDKESMVDPFLVEALQNPRHRLTILRMELDIQKFMNNADQHHFEFQHFPSSYLRLAAHRVAQHYGLQTMVQDNGLDGQSKILVRKLPESKYPVVRLSEIPAKQLDNEKSELKKIVIRPRPHNSGLNGANDSTKKGNPLRSVEERKEEYDRARARIFNGSTSFDSVDTSSMVPIDGKSSSMSKDENETSKIAMADPERCINFRDNGYPRVAIIRDREKDRSDPDYDRSYGRYARSLSASAINLVPFNLPNAQPSFAQYEPTFNPLVQMQQTQASIGYGLPSTPMMSPFVTPTLNPTSGDGAYLQWPSPTMMYAHSYDQFRHAVYQAPFGQPLSFDYSQNY* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1349 353 ProSiteProfiles R3H domain profile. 35 99 IPR001374 GO:0003676
Tpr6g1349 353 MobiDBLite consensus disorder prediction 132 158 - -
Tpr6g1349 353 PANTHER CAMP-REGULATED PHOSPHOPROTEIN 21 RELATED R3H DOMAIN CONTAINING PROTEIN 7 352 - -
Tpr6g1349 353 CDD R3H_encore_like 34 99 - -
Tpr6g1349 353 PANTHER OS05G0411600 PROTEIN 7 352 - -
Tpr6g1349 353 SMART R3H_4 19 100 IPR001374 GO:0003676
Tpr6g1349 353 ProSiteProfiles SUZ domain profile. 104 174 IPR024771 -
Tpr6g1349 353 Pfam R3H domain 37 88 IPR001374 GO:0003676
Tpr6g1349 353 SUPERFAMILY R3H domain 8 122 IPR036867 GO:0003676
Tpr6g1349 353 Gene3D - 13 133 IPR036867 GO:0003676
Tpr6g1349 353 Pfam SUZ domain 126 173 IPR024771 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1349 Tpr-Chr6 14273134 14277900 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1349 - - gmx:100814835 563.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g1349 6 14273134 14277900 Tpr6g1349 6 14273134 14277900 ECH