Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1338 ATGGCAGAAGAGTCGATGTGTTGCAGCAACAGTTTTGAGCTGAGCCCAGATGAAGAAAGGATCATGATCAGAGACATTGCGATTTCTTCTCAAGCTAATACCAAAGAAGGCGACACTTTCTTCATCATCACTCAGAGATGGTGGCAACATTGGATTGAATATGTGAACCAAGACCAGACAAACCCTTCTTACGATGGATCTTCCTTTCATGAACATAGCGATTTGGCCAGGTCAAGTTCTTTAAAGAGGCCAGCTGATATTGATAATTATGATTTGATAGATAATACCGGACCAGAGGACTCTAGTACGGGTATCGAAATTCATGATACACTTCTAGAAGGGCGTGACTATGTATTACTTCCCCAAGAGGTTTGGGACCAATTATTTAAATGGTACGGCGGCGGACCTACATTGGCGAGGAAAGTTATTAGTTCAGGACTTTCCCAGACAGAATTTGCAGTAGAGGTGTATCCTTTACGGCTTCAATTACTTGTGTTGCCAAAAAATGTCCAATCCTCTATAAGAATAAGCAAGAAGGAAACGATTGGACAGTTACACAAGAAAGCGTGTGAAATATTTGATCTTCAGTTAGACCAAGTGCGCATTTGGGATTACTATGGCCATCAGAGGCATGCCTTGATGAATGACATGAACAAAACTCTAGATGATGTCAATCTACAAATGGACCAAGATATTCTTGTTGAGGTGGTTAACATCACAAATAACACAAGTTTTGCTCAAGAAAATGGATCAGCACATAGGGAAACAAATTCTGTTCTTGTGGAGCCTTCAAAATTTGCTGGTGGCCTGTCTACCAGCAAGGGTGCATCTAGAGGCAACAATATTGAACTTTCTTCATCTCAGAAACTAAATTCTCCGGTCAGAGATTCGGAAAACCCTTATGGAACTCTTGGTGTCACCACAAGAGGTTCATTCGGTGGTCTCACTGGATTGCTAAATCTTGGCAATACTTGTTTCATGAATAGTGCAATACAGTGCCTTGTTCATACACCAGAATTTGCTAGGTACTTTAGGGAGGACTATCATCAAGAGATAAATTGGCAAAATCCACTCGGCATGGTGGGTGAACTAGCCCTAGCATTCGGTGAGTTGCTTCGAAAACTATGGGCACCTGGGAGAACCCCAATTGCTCCTCGGCCTTTTAAAGCAAAGCTTGCTCGCTTTGCACCTCAGTTCAGTGGGCACAACCAACACGATTCTCAGGAGCTTTTAGCATTTCTACTGGATGGTCTCCATGAGGACTTAAATCGTGTAAAGCACAAACCATATATAAAGTCTCGAGATGCTGATGGCCGTCCTGATGAAGAAGTGGCTGATGAGTATTGGGCAAACCATATTGCTCGTAATGATTCCATAATTGTTGATGTGTGTCAGGGACAATACAAGTCGACTTTGGTTTGTCCAGTTTGCAACAAGGTCTCTGTCACATTTGATCCTTTCATGTACCTTTCCCTGCCTCTCCAGTCCGCCACCAATAGGGCCATGACAGTGACGGTTTTTAGTTGTGATGGTTCTACCCAGCCATCTCCGTGTACAGTAACTGTGCCCAAGCAGGGACGGTGCAAAGATCTCATACAAGCACTTAGCAATGCTTGCTCATTGAAGCATAATGAGAGGCTAGTGCTTGTGGAGGTACGGAACCATTTGATCCATAGATATTTTGAAGATCCTCTTCAATTGTTGTCCTCAATTAAAGATGATGACCGTCTTGCCGCATACAAGATTACAAAGATGGACAAAAACACAAAGTACCTGCAGTTGATACATCGCCGCAGAGATAGTGACTCACAGACCATTTCAGGATGGAAACCGTATGGAACACCTATTGTTTCAGTGATCTCATGTGATGATACAATCACAAGAGGTGACATACAAGTACTAGTTAATCGTATACTCTCTCCTCTTCTATTGAAAGGTGGCAATGCAGCTGCTTCTGCTGAAATCAACACAGTGTCGAATTCAATAAATAAGGATACTACCGTTTCAAAGGCAACCCAACTACCAACATTACCTCTACTATTGGTAGATGATAATAATGCTTGTATTGATCTTTCAATGGGAGAGGATAAAGTAGTTAAACTGTCACCATCATCAGCAAGAGTTCTAGTGTATATTGATTGGTCTCAGAAGCTTTTGGAGAAGTATGATACTCATCCACTTGAGACTTTGCCAGAAGTTTTGAAATATGGCCCAGTAACCAAGAAAGCTCGTACCGAACCTCTCTCCTTGTACACTTGCTTGGAAGCTTTTCTGCGTGAAGAACCTTTGGTGCCTGAAGATATGTGGTACTGTCCTAAATGCAAAGAGAGACGGCAAGCAAGCAAAAAGCTTGATTTATGGAGGCTCCCCGAAGTTTTGGTAATTCATTTAAAGAGGTTCTCATACAGCAGGTCAATGAAGCATAAGCTGGAGACATTTGTTAACTTTCCCATTCATGATTTTGATTTAACAAATTACATAGCCAACAAAAACAACTCGCAGCGTCAAGTATATGAACTCTATGCCCTTACGAATCATTATGGTAGTATGGGTAGTGGGCATTATACTGCACATATTAAGCTTTTAGACGAAAACAGGTGGTACAATTTTGATGATAGTCACATATCACTCATAAGTGAAGATGAGGTTAATACTGCCGCCGCCTATGTTCTATTTTACCGGAGGGTGAAAACTGACGATGAAATTGTAAGCAACGGGGATTAG 2724 0.4181 MAEESMCCSNSFELSPDEERIMIRDIAISSQANTKEGDTFFIITQRWWQHWIEYVNQDQTNPSYDGSSFHEHSDLARSSSLKRPADIDNYDLIDNTGPEDSSTGIEIHDTLLEGRDYVLLPQEVWDQLFKWYGGGPTLARKVISSGLSQTEFAVEVYPLRLQLLVLPKNVQSSIRISKKETIGQLHKKACEIFDLQLDQVRIWDYYGHQRHALMNDMNKTLDDVNLQMDQDILVEVVNITNNTSFAQENGSAHRETNSVLVEPSKFAGGLSTSKGASRGNNIELSSSQKLNSPVRDSENPYGTLGVTTRGSFGGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFREDYHQEINWQNPLGMVGELALAFGELLRKLWAPGRTPIAPRPFKAKLARFAPQFSGHNQHDSQELLAFLLDGLHEDLNRVKHKPYIKSRDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQSATNRAMTVTVFSCDGSTQPSPCTVTVPKQGRCKDLIQALSNACSLKHNERLVLVEVRNHLIHRYFEDPLQLLSSIKDDDRLAAYKITKMDKNTKYLQLIHRRRDSDSQTISGWKPYGTPIVSVISCDDTITRGDIQVLVNRILSPLLLKGGNAAASAEINTVSNSINKDTTVSKATQLPTLPLLLVDDNNACIDLSMGEDKVVKLSPSSARVLVYIDWSQKLLEKYDTHPLETLPEVLKYGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPKCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFDLTNYIANKNNSQRQVYELYALTNHYGSMGSGHYTAHIKLLDENRWYNFDDSHISLISEDEVNTAAAYVLFYRRVKTDDEIVSNGD* 908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1338 907 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 5 12 906 - -
Tpr6g1338 907 Pfam Ubiquitin carboxyl-terminal hydrolase 316 893 IPR001394 GO:0004843|GO:0016579
Tpr6g1338 907 SUPERFAMILY Cysteine proteinases 314 896 IPR038765 -
Tpr6g1338 907 SMART dusp 33 146 IPR006615 GO:0004843
Tpr6g1338 907 SUPERFAMILY DUSP-like 15 143 IPR035927 -
Tpr6g1338 907 Gene3D Cysteine proteinases 715 903 - -
Tpr6g1338 907 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 316 896 IPR028889 -
Tpr6g1338 907 Gene3D Cysteine proteinases 307 545 - -
Tpr6g1338 907 ProSiteProfiles DUSP domain profile. 14 143 IPR006615 GO:0004843
Tpr6g1338 907 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 838 855 IPR018200 GO:0004843|GO:0006511
Tpr6g1338 907 Gene3D - 157 243 - -
Tpr6g1338 907 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 12 906 - -
Tpr6g1338 907 Pfam DUSP domain 37 143 IPR006615 GO:0004843
Tpr6g1338 907 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 317 332 IPR018200 GO:0004843|GO:0006511
Tpr6g1338 907 Gene3D - 7 156 IPR035927 -
Tpr6g1338 907 MobiDBLite consensus disorder prediction 270 297 - -
Tpr6g1338 907 CDD Peptidase_C19R 741 894 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1338 Tpr-Chr6 14133088 14143504 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1338 749 898 Miscellaneous Gene Families AT4G31670 34.641 2.12e-17 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1338 - - mtr:MTR_7g088760 1678.69