Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1328 ATGCCTAGAGGTGTAATTTCTGACGACGAAGATGAGGTTGAGGTCGCTATGGAAGAGAGAGAGCCTGTTGATGGTGAAGAATTGGAGGAAGAAGGTCGTGAGATGGATGACGATGATGAGGATGAAGAAGAGGGGCAGGATGAATATGAAAAGGATGGATTTATAGTTGATGACATTGAGGAAGAAGAGGAGCACGATGAAGAAGAAAGAGCAGAAAGTGACGAAGAGCGTCAGAAGAAGAAAAAGAGGAAGAAAAAGGAGGAGTATGTCCTTGATGAAGATGATTATGAGTTGCTGGAGGACAATAATATCAATATTCATCGTCGAAAGGACAGCAAAAAGTTCAAGCGACTGAAAAAGGGCCAAAGGGACACTGAGGAGGGGCACTCTGGACAAGATGATGAAGAGGAGTTTTTTCGAAGTGGTAAAGTTGGGCGAACTGCCGAGGAGAAGCTTAAACACAGTTTATTTGGCGATGATGAAGGATCTCATCTTGAAGACATTGCTGAAGAGGAGGAGCAAGTAGAAGAGGAGGAGGATGCCGACATCGGAGATGAAGATGAAATGGCCGACTTTATTGTGGATGAAGAAGAAGTTGATGAGAACGGAGCCCCTGTGAGTAAGACTAGGAAGCCGAAGGGTGTAAGAAGGATTAGGCAGGCGCCTGGAGTCTCATCTTCAGCTTTACAAGAAGCTCAAGAATTATTTGGCGATGTCGACGAGTTGCTTGAGGCTCGCCATCAAAGTCGAGAAAAGAATGATTATAAAGAGACTAGACTTGAAGATGAATTTGAGCCTATTGTTCTCTCTGAGAAATACATGACAGAGAACGATGATCGGATTAGGGAGCTTGATATTCCAGAGAGAATGCAGATATCGGAGGAGAGTACTGGTGCTCCTTCACTGGATGGAAGTAGTATAGATGAAGAGAGTCAGTGGATAGTTAATCAACTTAAAGATGGGGCAGTCCCTTGGATTGGCAAGAAAGATTCAAGCTCTCAAGATAAGGAGCTACCAATTGACAAGGATGATATTGTCAGATTTTTGGAACTGCATCACGTGCAAAAATTAGATATTCCTTTTATTGCCATGTATCGGAAAGAGGAGTGTTTAAGCTTATTGAAAGACCTGGAGCGGCCTGAAGCTGGTGATGAGAATTCGGATAAGAATGACAAGACACCTACTCTAAAATGGCACAAGATACTTTGGGCTCTACAGGACCTGAACAGGAAGTGGTTGCTTCTTCAGAAGCGGAAGAATGCCCTCCAACAATACTACAATAAACGGTTTGAAGAAGAGTCTCGTCGTGTATACGATGAAACAAGACTAAACTTAAATAGGCAATTGTTTGAATCAGTTATGAGATCACTGAAAGAGGCAGAATCAGAGAGGGAGGTTGACGATGTTGACTCCAAGTTCAACTTACATTTCCCACCAGGTGAAGCTGGTGTTGATGAAGGACAGTACAAAAGGCCAAAACGGAAGTCAATGTACAGCTCTTTCAGTAAGGCGGGTCTGTGGGAGGTTGCAAGCAGGTTTGGCTGTAGTTCTGAGCAACTTGGATTATGTCTATCTGTAGTTCAGCTGCAAGAGTTGGAAGACCCAAAGGAAACACCAGAAGAGGTGGCTTCTAACTTCACATGTGCTATGTACAATACCCCTGAAGAAGTACTTAAATGTGCTAGACACATGGCAGCCGTTGAGATAAGTTGTGAGCCTAGCATAAAGAAACATGTCCGTAGCCACTTTATTGACCACGCTGTGGTGTCAACTTCCCCTACTGCCGATGGAAATATAACCATAGATTCATTCCATCAGTTTTCTGGGGTGAAGTGGCTGCGAGAGAAGCCTTTGTCTAAATTTCTGGATGCCCAATGGCTCCTTATACAGAAGGCAGAAGAGGACAAACTCATTCAAGTTACTATTAAGTTTCCTGAAGAGCATCTTAACAAGTTAATAGACCAATTCAATGAGTATTATGTTAGTGATAGTGTTAGCAGATCTGCTCAATTGTGGAATGAACAGAGGAAGCTGATACTTCAGGATGCAATTTTTCGATTTCTTTTACCATCAATGGAAAAAGAAGCAAGGGGCGTCTTAGCAAGCAAAGCAAAGCATTGGGTACTTATGGAGTATGGGAAGGCCTTTTGGAATAAGGTTTCTGTGGGGCCTTATCAACAGAAGGAAAATGATCTTAGCTCGGATGATGAGGCTGCTCCTAGGGTTATGGCTTGCTGTTGGGGCCCCGGAAAGCCACAAACAACTTTTGTTATGTTAGATTCTTCGGGAGAAGTGCAAGATGTGTTATACACTGGGTCACTTACTTTAAGGTCTCAGAACGTCCATGACCAACAAAGGAAGAAGAATGACCAGGAACGTGTCTTGAAGTTTATGACAGATCACCAACCACATGTTGTTGTTTTAGGAGCAGCTAACTTGTCTTGCACTCGTTTGAAAGAAGATATATATGAGGTTATTTATAAGATGATCGACGAAAACCCTAGAGATGTTGGGCATGATATGGATGGGCTCAGCATTGTGTATGGAGATGAATCTCTGCCCCGTCTTTATGAAAATTCTCGAATTTCCTCTGAACAGCTTCCTTCGCAGCAGCTAGGTATAGTGAGACGGGCTGTTGCTCTTGGTCGATTTCTCCAGAACCCATTGGCAATGGTTGCGACATTATGTGGGCCCAGAAAGGAAATATTATCATGGAAATTGAGCCCTTTGGAGAGTTTCCTCAACCCGGATGATAAAATTGGGATGGTTGAGCAGGTTATGGTAGATGTGACCAATCAGGCTGGCTTAGACATTAATTTAGCAATAAGCCACGAATGGTTATTTGCTCCGTTACAATTTATTTCGGGGCTTGGTCCACGAAAGGCTGCATCCTTGCAAAGATCACTGGTTAGAGCTGGCGGAATTTTTACCCGGAAGGACTTTTTGACAGAACATAAACTTGGTAAAAAGGTGTTTGTCAACGCGGTTGGTTTCTTGCGTGTCCGGCGAAGTGGATTGGCTGCTAGCAGCAGCCAATTTATTGACTTGTTGGATGATACACGAATTCATCCAGAATCGTATATTCTTGCACAGGAGTTGGCCAAAGATGTGTATGAGGAGGATGGCACAGGTGATGCAAATGATGACGATGATGCACTAGAGATGGCCATAGAACATGTGAGAGATCGACCTAGTTATTTGAAAAACCTGGATGTTGAGGCATACGCTGCTGCAAATAATCGTCAAGACAAAATTGAAACTTTCTATGATATTAAAAGAGAATTGATTCATGGTTTTCAAGATTGGCGTAAGCAATATGAAGAACCAAGTCAGGATGAGGAGTTCTATATGATATCAGGTGAGACTGAAGAGACTCTTGCTGAAGGTAAAATAGTCCAGGTTACAGTTCGCCGAGTGCAAGCTCAGAAAGCAATATGTGGTCTTGAATCGGGAATGACTGGAATCCTTATGAAAGAAGACTATACAGATGACTGGAGAGATATAATTGAATTATCTGATAGGCTACATGAAGGTGACATGCTCACGTGTAAAATCAAGTCAATTCAAAAGAACAGGTATCAAGTCTTCCTTGTTTGTAAAGATAGTGAAATGAGAAGTGATCGGTTACAGAGCAACCATGATTTCGATCCCTATTACCATGAAGACCGGAGCTCCTTACCGAGTGAGCAAGACAAAACCCGGAAAGAAAAGGAGCGTGCAAAGAAGCATTTCAAGCCAAGGATGATTGTTCATCCACGCTTTCAGAACATAACTGCAGACGAAGCAATGGAGTTCTTGTCGGACAAGGATCCTGGTGAAAGTATTTTCCGTCCTAGTTCCCGGGGTCCTTCATACCTTACTTTGACTCTTAAAATTCACGATGGAGTATATGCCCATAAAGATATAGTTGAAGGTGGGAAGGAACTCAAGGATATCACAAGTTTACTTCGAATCGGAAAGACACTAAAAATTGGAGACGACACTTTTGAGGATTTAGATGAGGTTATGGACCGATATGTTGATCCCTTGGTGACTCACTTAAAAACAATGTTAAATTATCGCAAGTTCAGGACGGGTATGAAAACAGAAGTTGATGAACTTTTGAGGATTGAAAAGGCAGAGTATCCCATGCGCATAGTTTATAGTTTTGGCATCTCCCATGAACATCCTGGCACATTTATATTGACTTACATAAGAAGTACAAATCCACACCATGAGTACATTGGTCTTTATCCCAAAGGATTCAGGTTTCGCAAAAAGATGTTCGAGGATATTGACCGGCTTGTGGCATATTTTCAAAGGCACATTGATGATCCACAAAATGATTCAGCACCTTCCATTAGATCTGTAGCTGCAATGGTGCCAATGCGAAGCCCTGCAACTGGTGGCTCATCAGGGACATCTGTGGGTAGTGGCTGGGGTGGTTCCAACAGCGAGGGTGGCTGGAGAGGTCACTCGTATGATAGGGACCGATCTTCTACTCCTGGTTCCAGAACAGGACGGCCTGATTACAGAAACAATGGGAGTCGAGATGAACACCCTAGTGGAGTGCCTCGTCCATATGGTGGTGGACGAGGGCGTGGTCGTGGTTCTTATAACAATAGCAGTAGAGGACACAACTCCAACAATGAAAGGCATGATGGTGCAACCAGATGGGGATCTGCTGCTACAAAAGACAGGGATGATAATTTGAGCAACTTTCCAGGGGCTAAGGTTCAAAATTCCCCCGGAAGGGAAGCATTTCCTGGTAGTTGGGGTGGAACCGGTGGCTGGGGAGGTGGAGCTAGTACTGGCGACAAAAGTGGCTGGGGTGCTGGTCCAAGCGATGCTGAACATGGAAGCTCTGGCTGGGGAACTGGTTCCAAGAAGGCTGCTGACATTGGATGGTCTGGAAACTGA 4899 0.437 MPRGVISDDEDEVEVAMEEREPVDGEELEEEGREMDDDDEDEEEGQDEYEKDGFIVDDIEEEEEHDEEERAESDEERQKKKKRKKKEEYVLDEDDYELLEDNNINIHRRKDSKKFKRLKKGQRDTEEGHSGQDDEEEFFRSGKVGRTAEEKLKHSLFGDDEGSHLEDIAEEEEQVEEEEDADIGDEDEMADFIVDEEEVDENGAPVSKTRKPKGVRRIRQAPGVSSSALQEAQELFGDVDELLEARHQSREKNDYKETRLEDEFEPIVLSEKYMTENDDRIRELDIPERMQISEESTGAPSLDGSSIDEESQWIVNQLKDGAVPWIGKKDSSSQDKELPIDKDDIVRFLELHHVQKLDIPFIAMYRKEECLSLLKDLERPEAGDENSDKNDKTPTLKWHKILWALQDLNRKWLLLQKRKNALQQYYNKRFEEESRRVYDETRLNLNRQLFESVMRSLKEAESEREVDDVDSKFNLHFPPGEAGVDEGQYKRPKRKSMYSSFSKAGLWEVASRFGCSSEQLGLCLSVVQLQELEDPKETPEEVASNFTCAMYNTPEEVLKCARHMAAVEISCEPSIKKHVRSHFIDHAVVSTSPTADGNITIDSFHQFSGVKWLREKPLSKFLDAQWLLIQKAEEDKLIQVTIKFPEEHLNKLIDQFNEYYVSDSVSRSAQLWNEQRKLILQDAIFRFLLPSMEKEARGVLASKAKHWVLMEYGKAFWNKVSVGPYQQKENDLSSDDEAAPRVMACCWGPGKPQTTFVMLDSSGEVQDVLYTGSLTLRSQNVHDQQRKKNDQERVLKFMTDHQPHVVVLGAANLSCTRLKEDIYEVIYKMIDENPRDVGHDMDGLSIVYGDESLPRLYENSRISSEQLPSQQLGIVRRAVALGRFLQNPLAMVATLCGPRKEILSWKLSPLESFLNPDDKIGMVEQVMVDVTNQAGLDINLAISHEWLFAPLQFISGLGPRKAASLQRSLVRAGGIFTRKDFLTEHKLGKKVFVNAVGFLRVRRSGLAASSSQFIDLLDDTRIHPESYILAQELAKDVYEEDGTGDANDDDDALEMAIEHVRDRPSYLKNLDVEAYAAANNRQDKIETFYDIKRELIHGFQDWRKQYEEPSQDEEFYMISGETEETLAEGKIVQVTVRRVQAQKAICGLESGMTGILMKEDYTDDWRDIIELSDRLHEGDMLTCKIKSIQKNRYQVFLVCKDSEMRSDRLQSNHDFDPYYHEDRSSLPSEQDKTRKEKERAKKHFKPRMIVHPRFQNITADEAMEFLSDKDPGESIFRPSSRGPSYLTLTLKIHDGVYAHKDIVEGGKELKDITSLLRIGKTLKIGDDTFEDLDEVMDRYVDPLVTHLKTMLNYRKFRTGMKTEVDELLRIEKAEYPMRIVYSFGISHEHPGTFILTYIRSTNPHHEYIGLYPKGFRFRKKMFEDIDRLVAYFQRHIDDPQNDSAPSIRSVAAMVPMRSPATGGSSGTSVGSGWGGSNSEGGWRGHSYDRDRSSTPGSRTGRPDYRNNGSRDEHPSGVPRPYGGGRGRGRGSYNNSSRGHNSNNERHDGATRWGSAATKDRDDNLSNFPGAKVQNSPGREAFPGSWGGTGGWGGGASTGDKSGWGAGPSDAEHGSSGWGTGSKKAADIGWSGN* 1633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1328 1632 Gene3D SH2 domain 1349 1445 IPR036860 -
Tpr6g1328 1632 CDD SH2_Cterm_SPT6_like 1350 1436 IPR035018 -
Tpr6g1328 1632 PANTHER TRANSCRIPTION ELONGATION FACTOR SPT6 85 1606 - -
Tpr6g1328 1632 MobiDBLite consensus disorder prediction 164 200 - -
Tpr6g1328 1632 MobiDBLite consensus disorder prediction 1 230 - -
Tpr6g1328 1632 SUPERFAMILY RuvA domain 2-like 1015 1104 IPR010994 -
Tpr6g1328 1632 MobiDBLite consensus disorder prediction 1210 1237 - -
Tpr6g1328 1632 SUPERFAMILY SH2 domain 1254 1340 IPR036860 -
Tpr6g1328 1632 SMART rnase_8s 740 858 IPR006641 GO:0006139
Tpr6g1328 1632 CDD SH2_Nterm_SPT6_like 1251 1339 IPR035019 -
Tpr6g1328 1632 Gene3D - 730 1121 IPR037027 GO:0006139
Tpr6g1328 1632 MobiDBLite consensus disorder prediction 1210 1242 - -
Tpr6g1328 1632 Pfam SH2 domain 1218 1435 IPR035420 -
Tpr6g1328 1632 Pfam Acidic N-terminal SPT6 36 124 IPR028083 -
Tpr6g1328 1632 Gene3D - 1010 1102 IPR042066 -
Tpr6g1328 1632 PIRSF Spt6 4 1506 IPR017072 GO:0032968
Tpr6g1328 1632 MobiDBLite consensus disorder prediction 1460 1475 - -
Tpr6g1328 1632 SUPERFAMILY Nucleic acid-binding proteins 1124 1204 IPR012340 -
Tpr6g1328 1632 Coils Coil 56 88 - -
Tpr6g1328 1632 SUPERFAMILY Tex N-terminal region-like 336 719 - -
Tpr6g1328 1632 Pfam Helix-hairpin-helix motif 900 1001 IPR032706 -
Tpr6g1328 1632 ProSiteProfiles S1 domain profile. 1129 1200 IPR003029 GO:0003676
Tpr6g1328 1632 MobiDBLite consensus disorder prediction 1459 1632 - -
Tpr6g1328 1632 Gene3D SH2 domain 1237 1348 IPR036860 -
Tpr6g1328 1632 Gene3D - 297 496 IPR023319 -
Tpr6g1328 1632 SUPERFAMILY RuvA domain 2-like 912 1002 IPR010994 -
Tpr6g1328 1632 MobiDBLite consensus disorder prediction 11 71 - -
Tpr6g1328 1632 MobiDBLite consensus disorder prediction 118 163 - -
Tpr6g1328 1632 Gene3D - 264 1004 - -
Tpr6g1328 1632 SUPERFAMILY Ribonuclease H-like 740 896 IPR012337 -
Tpr6g1328 1632 SMART S1_6 1127 1200 IPR022967 -
Tpr6g1328 1632 Pfam Holliday-junction resolvase-like of SPT6 739 896 IPR028231 -
Tpr6g1328 1632 Gene3D - 497 934 IPR023323 -
Tpr6g1328 1632 PANTHER TRANSCRIPTION ELONGATION FACTOR SPT6 85 1606 IPR017072 GO:0032968
Tpr6g1328 1632 MobiDBLite consensus disorder prediction 1540 1558 - -
Tpr6g1328 1632 Pfam HHH domain 1016 1103 IPR041692 -
Tpr6g1328 1632 MobiDBLite consensus disorder prediction 72 92 - -
Tpr6g1328 1632 Gene3D - 1122 1209 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1328 Tpr-Chr6 13981584 13990801 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1328 K11292 - gmx:100809136 2653.63