Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1257 ATGGCCACCGTCCTCCAAACTCCCACATTCCGGCCATCCCTAACCCTCCTCACCACCACCACCGCCGCCACATCATCCAATCACCCCAAAACCTCTAGGGTTTCTATCACATCCTCCAGAAGGAAACTATCGCCACTTAAATCCCTCCGGTTCCATTCAATTCCCTCCCTCCGGTTCGTTAAGTTAGTACCTTTTGCTTTTGACGGAGATACCGAGGCTCCTCAAGTTCAAGAACAACCTGAAGTTCAGGTTCTGGATTCTTCAGATGGTGCTGTTGCTGTGGAGGATAGTACAGGTGATGATGAGTTCAGCGACGCTGTTGAAATACCTTCTTCACCTTTGCTAGTATTACTGCAGTCTTACAAAGAAGCATTAGTTAATAATGATGAAGTCAAAGTTGCCGAGTTGGAATCATCATTAAAATCCATTGATGACGAGATAGCAGGTCTCGAAGGGAAAATAGCTTCTTTATCCGAAGAATTATCAATAGAGAAAGATCGGAAACTAAGGATTGGTGCAGACTTTGACAATTATCGGAAGAGGACCGATAGAGATCGCCTTTCGTTGGTCACAAATGCTCAGGGGGAAGTTGTGGAGAGTTTGTTGCCTGTATTGGATAATTTTGAGAGAGCTAAAGCTCAGATTAAGGTGGAAACAGAGGGAGAGGAGAAAATAAACAATAGCTATCAGAGCATATACAAGCAGTTCATTGAAATTCTAAACTCACTAGGAGTTGAGCCAGTGGAGACGGTTGGAAGCCCCTTTGATCCAATGCTACATGAAGCAATTATGCGTGAGGATTCTGATGAGTTTGAAGAAGGCATCATACTTCAAGAATTCAGAAAAGGTTTTAAACTTGGTGACCGCCTCTTACGCCCATCAATGGTGAAGGTATCAGCTGGTCCAGGACCAGCAAAGCCAGAACAAGCATCACAGGAAGAACAAGTCACAAATGAAATTTCCGAGGACGGTAAAGAGATTGATGGTAGCACAGAAACAGAGTCTGCTTGA 1011 0.4431 MATVLQTPTFRPSLTLLTTTTAATSSNHPKTSRVSITSSRRKLSPLKSLRFHSIPSLRFVKLVPFAFDGDTEAPQVQEQPEVQVLDSSDGAVAVEDSTGDDEFSDAVEIPSSPLLVLLQSYKEALVNNDEVKVAELESSLKSIDDEIAGLEGKIASLSEELSIEKDRKLRIGADFDNYRKRTDRDRLSLVTNAQGEVVESLLPVLDNFERAKAQIKVETEGEEKINNSYQSIYKQFIEILNSLGVEPVETVGSPFDPMLHEAIMREDSDEFEEGIILQEFRKGFKLGDRLLRPSMVKVSAGPGPAKPEQASQEEQVTNEISEDGKEIDGSTETESA* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1257 336 CDD GrpE 165 298 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Tpr6g1257 336 SUPERFAMILY Head domain of nucleotide exchange factor GrpE 245 301 IPR009012 GO:0006457
Tpr6g1257 336 Gene3D - 128 242 IPR013805 -
Tpr6g1257 336 Gene3D Head domain of nucleotide exchange factor GrpE 244 299 IPR009012 GO:0006457
Tpr6g1257 336 PRINTS GrpE protein signature 169 185 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Tpr6g1257 336 PRINTS GrpE protein signature 197 212 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Tpr6g1257 336 PRINTS GrpE protein signature 252 267 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Tpr6g1257 336 PRINTS GrpE protein signature 279 298 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Tpr6g1257 336 PANTHER GRPE PROTEIN 15 314 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Tpr6g1257 336 ProSitePatterns grpE protein signature. 255 298 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Tpr6g1257 336 Coils Coil 126 167 - -
Tpr6g1257 336 MobiDBLite consensus disorder prediction 318 336 - -
Tpr6g1257 336 Pfam GrpE 139 299 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Tpr6g1257 336 SUPERFAMILY Coiled-coil domain of nucleotide exchange factor GrpE 146 244 IPR013805 -
Tpr6g1257 336 Hamap Protein GrpE [grpE]. 77 300 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Tpr6g1257 336 PANTHER GRPE PROTEIN HOMOLOG 15 314 - -
Tpr6g1257 336 MobiDBLite consensus disorder prediction 297 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1257 Tpr-Chr6 12975712 12979911 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1257 K03687 - gmx:100820521 469.544