Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1256 ATGGAATCAAGCGTTCTAGAATGCATCGGTGTAGAGATAATCGGAGTAATGTCACCGGTATCAATCTGCATGTTCCTCGTCGTCCTCCTCGTTTACTCACTTTCCACTTCCTCCTCCCCTGAAACCACCATCACCACCGCCGCAAATCTCGTCTACGCCGAAAACCCCTCCGACACCACCGCACAAAAACTCGAAGGCGCAGTTCTAAACGCCGTCGTTTTCGTCATCCTAATCGCAATCGTAACTTTCCTTCTCGTTCTCCTTTACTACTATAACTGCACTTCCTTCCTCCGTAACTACGTTCGTTTCTCCGCTTTCTTCGTTCTCGCTTCTATGGGCGGATCCATTTTCCTTTCACTAATTCAACGTTTCTCAATTCCGTTAGATTCAATTACTTGTTTCATTCTTCTCTTCAATTTCACTATTATTGGTGTTCTTTCAATTTTCGCTTCTGCTATTCCGATTATTCTTCGTCAGTGTTATATGGTTTGTTTAGGTATCATCGTTGCCGCGTGGTTCACGAAGCTTCCTGAATGGACCACGTGGACGCTTCTTGTTGCTCTTGCTGTTTATGATCTTGTTGCTGTTTTAGCTCCCGGTGGTCCGTTGAAGCTTCTCGTTGATTTGGCTTCTAGCCGGAACGAGGAGCTTCCTGCTCTTATCTATGAAGCTCGCCCTACCGTTGCCCCAACCGGTAGGGCTGCTGCATTAGGGTTTTTGGTTGCCGGAGTTGCTGAATCAGAATCATCGTCGATTGAGCTTCAGGTAGTCCCCACTGAGAATCATAGTAATAGTAATACTCATGCTGCTGGTAGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGATTCTGTGGCTGTTGTTAGGGTTGACGATTTTCTAAATGATGAAGGGGAAAGATCACCATTGGTTGGTAACGCGATTCGCCACGAGGAAAGGTCTCCACTTGTTGAGGTGATGAGGAATGAGAGAGAAATGGGGACAATGAGGAGGGAAGAAGTTGAGGAAGTTGCTGAGAGAGGGATTAAGCTTGGACTTGGTGATTTTGTATTCTACAGTGTTCTTGTGGGTAGAGCTGCAATGTATGATCTCATGACTGTTTATGCTTGTTATCTTGCAATTATATCTGGACTTGGTTGCACTCTTATTTTGTTATCGGTTTGTCGTCATGCTCTGCCTGCTCTTCCGATTTCGATTGCGTTGGGTGTGCTTTTCTATTTCTTGACTAGATTGTTAATGGAACCTTTTATTGTTGGAACTGCTACAAATTTGATGATGTTTTGA 1281 0.4512 MESSVLECIGVEIIGVMSPVSICMFLVVLLVYSLSTSSSPETTITTAANLVYAENPSDTTAQKLEGAVLNAVVFVILIAIVTFLLVLLYYYNCTSFLRNYVRFSAFFVLASMGGSIFLSLIQRFSIPLDSITCFILLFNFTIIGVLSIFASAIPIILRQCYMVCLGIIVAAWFTKLPEWTTWTLLVALAVYDLVAVLAPGGPLKLLVDLASSRNEELPALIYEARPTVAPTGRAAALGFLVAGVAESESSSIELQVVPTENHSNSNTHAAGSGGGGGGGGGDSVAVVRVDDFLNDEGERSPLVGNAIRHEERSPLVEVMRNEREMGTMRREEVEEVAERGIKLGLGDFVFYSVLVGRAAMYDLMTVYACYLAIISGLGCTLILLSVCRHALPALPISIALGVLFYFLTRLLMEPFIVGTATNLMMF* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1256 426 Pfam Presenilin 11 416 IPR001108 GO:0004190|GO:0016021|GO:0016485
Tpr6g1256 426 Gene3D Presenilin 317 417 IPR042524 -
Tpr6g1256 426 SMART psh_8 65 412 IPR006639 GO:0004190|GO:0016021
Tpr6g1256 426 PANTHER PRESENILIN 1 426 - -
Tpr6g1256 426 PRINTS Presenilin family signature 17 27 IPR001108 GO:0004190|GO:0016021|GO:0016485
Tpr6g1256 426 PRINTS Presenilin family signature 175 182 IPR001108 GO:0004190|GO:0016021|GO:0016485
Tpr6g1256 426 PRINTS Presenilin family signature 192 209 IPR001108 GO:0004190|GO:0016021|GO:0016485
Tpr6g1256 426 PANTHER PRESENILIN 1 426 IPR001108 GO:0004190|GO:0016021|GO:0016485
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1256 Tpr-Chr6 12963072 12964583 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1256 1 426 Miscellaneous Gene Families AT1G08700 62.393 0.0 534
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1256 K04505 - gmx:100799010 562.762