Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1250 ATGGTAAAACCCATGATAAATCTCAAGAACATGATAATGGCGCTATCATCTTCATCATCATCATCATGTTCATGTTTTTCACCTTCTACAACAACACTTCATCCTCGTTCCCGTTCTTTCACTACTCAATTCCACCGTAACAAACCTTGTATCCGTTTTCGCCGAACAATTTCCGCCACCGCTACTGTTTCAACTCCGTCACTCCACTCTACCACCAGAGAAGGACTTGACGCCGTTAACATTGCCGAAGATGTCACTCAGTTGATTGGAAATACACCTATGGTGTATCTGAATAAAGTTACAGAAGGATGTGTAGCTAACGTTGCTGCAAAACTTGAATCTATGGAGCCATGCCGAAGTGTCAAGGACAGAATTGGCTATAGCATGTTGGCTGATGCTGAAGAGAATGGAGCAATTGCTCCGGGGAAGACTGTTTTAGTTGAACCAACAACTGGAAATACAGGACTTGGCCTTGCTTTTGTTGCGGCAACTAAGGGGTATAAATTGATAGTCACAATGCCTGCTTCCGTAAATATTGAGAGGAGAATCCTTTTACGCACATTTGGTGCAGAGGTTATTTTGACGAATGCAGAGAAAGGGCTGAAAGGGGCTGTTGACAAAGCTGAAGAAATTGTCAACGCCACACCCAATGCTTACATGTTTCGACAGTTTGATAACAAAAATAATACCAAGATCCACTTCGAAACTACAGGGCCAGAGATATGGGAGGATACCATGGGTAGTGTTGATGTATTGGTTGCTGCTATTGGAACTGGCGGCACTATTACAGGCACCGGAGATTATCTGAAATTGATGAACAAAAATATACAGGTGGTTGGGGTGGAACCTGCAGACAGAAGTATAATCTCAGGAGACAATCCAGGTTTCATACCAAGCATTTTGGATATCAAACTGCTTGATGAGGTTGTCAAGGTTACCAATGTTGAAGCTATTGAAATGGCAAGGAGATTAGCATTGGAAGAAGGATTGCTGGTTGGGATTTCTTCAGGAGCTGCAGCAGCAGCTGCCATAACTTTAGCAAGGCGGCCCAAAAATGCTGGAAAACTTATAGCAGTTATTTTTCCTAGTTTTGGTGAGAGGTATCTTACCACTACCCTCTTCAATTCTATCTATGAAGAGGTTCGGCGAATGTAA 1155 0.4277 MVKPMINLKNMIMALSSSSSSSCSCFSPSTTTLHPRSRSFTTQFHRNKPCIRFRRTISATATVSTPSLHSTTREGLDAVNIAEDVTQLIGNTPMVYLNKVTEGCVANVAAKLESMEPCRSVKDRIGYSMLADAEENGAIAPGKTVLVEPTTGNTGLGLAFVAATKGYKLIVTMPASVNIERRILLRTFGAEVILTNAEKGLKGAVDKAEEIVNATPNAYMFRQFDNKNNTKIHFETTGPEIWEDTMGSVDVLVAAIGTGGTITGTGDYLKLMNKNIQVVGVEPADRSIISGDNPGFIPSILDIKLLDEVVKVTNVEAIEMARRLALEEGLLVGISSGAAAAAAITLARRPKNAGKLIAVIFPSFGERYLTTTLFNSIYEEVRRM* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1250 384 CDD CBS_like 90 370 - -
Tpr6g1250 384 TIGRFAM cysK: cysteine synthase A 86 374 IPR005859 GO:0004124|GO:0006535
Tpr6g1250 384 Gene3D - 87 369 IPR036052 -
Tpr6g1250 384 ProSitePatterns Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 111 129 IPR001216 GO:0006535
Tpr6g1250 384 Pfam Pyridoxal-phosphate dependent enzyme 85 361 IPR001926 -
Tpr6g1250 384 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 81 377 IPR036052 -
Tpr6g1250 384 TIGRFAM cysKM: cysteine synthase 86 374 IPR005856 GO:0004124|GO:0006535
Tpr6g1250 384 Gene3D - 123 225 IPR036052 -
Tpr6g1250 384 PANTHER S-SULFO-L-CYSTEINE SYNTHASE (O-ACETYL-L-SERINE-DEPENDENT), CHLOROPLASTIC 54 384 - -
Tpr6g1250 384 PANTHER CYSTATHIONINE BETA-SYNTHASE 54 384 - -
Tpr6g1250 384 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1250 Tpr-Chr6 12879058 12884090 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1250 77 384 Miscellaneous Gene Families AT3G03630 77.922 5.10e-167 471
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1250 K22846 - gmx:100816974 543.888