Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1240 ATGGGCAGCGCCGCCCCAAGGTTCCTCTTCATCCTCCGTCACAACCTCCGTCTCCTCTCTCCCTCTTTCTCCTCTCATTTCCACCACCACCACCACCACCACCACCGCGCTCTCTTTTCCTCATTCACTTCTTCTCTCACACCAAAACTTAAACTCAAACTCAAAGCCTCACAACATCACCAACAACAACACATTCACACTCAACCTTCTTCATCTTCCCTCGGTGGGACCCATCCATGGCCCGAGTTTTCAAGCTTTCTCTCTCACATCTCCTCCGCCGGCTACACTTCCACTATTCCTTCCGCCAATACTTTCCCTCCCACCGGAGAATTGTCCTATGCCGATGTCAGTGCCTGCTTGACCTTCGCTCGAGATAGACCTAACCTTCTTAGGTTGCTTTCGATGAGAGATATTGCAGTTGTGGTTGAACATGGAACCCCGTTCATGTTCTCAGACTCTGATGATTCTGTTTGGAAGATGAAGTCTTTTGTATCCAACGGTGATTCAACTGCCCTGGACACTGATAAAGCAAATATGGTTGATCTAATGAAATTTATGCTGAGTTATGCAAGTAACTGTTTGGTCTCTTCAGAAAGGAACAGTCCCTATAACAGAAATCTTGTTGAATCATCAGTCAGAAACCTATTTGGTGAACTTTTCAAGCTGAGTTATAGTGCACCTGGACCTAACTCTTTTGATTCAGAGCAAAATCAAATGCCCGGTGGTAGATTTGGGCGTACAACACCTCCTGGACAAAATATTGAAATGAAAAGGGGTGATTGGATTTGCCCAAGGTGTAATTTCATGAATTTCGCAAGAAATACTAAATGTCTTGAATGTGAGGAAGCAAGGCCAAAAAGACAACTGACTGGAGGAGAATGGGAATGTCCTCAGTGTGATTTCCATAATTATGGGAGGAATGTAGCTTGCTTAAGGTGTGATTGCAAGCGGCCCGGACAAATATCTTTGGGTGCCACCAATACCATGTCACATCCAGGGTATGGAAATAGAGACAATACTAATGCTTCAGATATCGATCCTAGGTTAGTGCTTAATGAAGAAAAGGCACAACGTTGGTTTAACAAGGTTTCTCAACTAGACAGCAATTCTGATATTAACAGTGTGGTTGATGATGAAGATTTTCCAGAAATAATGCCGTTAAGGAAAGGAGTTAATAGATTTGTTGTGAGCACAAGGAAAACTCCATTGGAAAATAGGTTGACCAATGCTCAATTCAAGAGAAATTTGGGAAATAACGACACTCCCGGAGTCGAGAATTTAACATCTTGGGAGTCAGCCAAGTCCCATGATACTCGAGATGACATTCTAGGCCATTCAACTGGCCTTCCTCAATCTGATTATAAAAATATGGGTGCTGAACGAAATTTCAGTGGAGAAAGGTCACCTTCAAATGCTAGCAACTCTTCACATTTCAAAGATGTGAAAGGGAACGACACTACTACTCTTCCCCCCTTTCCATCATATGCCAGTTCTGGTAACACTGATGGTACAGAACTTTCTAATAACTTTACAAGTGAAAATGTCAACGAGGATAAGGAGAAAGAGCAAGCTGAAAAATCTGAGAGATGGTTTAGAAAGATTGGAGAGCTGAATGATATTCCAGATATAACAAGTGCAATATCCGATGATGATTTCCCTGAAATAATGCCGATGCGTAAAGGAGAAAACCGATTTGTTGTTAGCAAGAAAAAAGATCGGTCCTTGACAACACCCACATATAAGAGACGTTTGGCCATGGAGCAATCTGGCAATACCAACTTTGTCCCCTTTGTACCCTTCCCTCCAGATTACTTTACCAAAAAGGACAAGCCGCAGGCAGATGGAACAGATTCAACGAATAGGTCCAATGTTGAATCCTCCTCAATATCTGAAGTGGCTGAGATGTCAAGTGATGCTAGAACTAGACCTGAACAGAGTCCAGAACCTTCTTCTAATCAGAGCTCAAGTAACAACAATCACGTTGGTTCTACTTATGCTGCTACAAGAAGTGGAAATTCAAGTCAGGGTTTCAATCAAGATCATGTACCAAATTTGAAAGAGAGTTCATCCGCAGGTTCAACATCTGAGAACCAGAGTGTTGGAACAGAGTGGGAAGGGAAGAGTTTAGAGGGGTCGGCAGTCAGGGAACCAGATCCTTTGGACATGTCAGAGGAGGCAAAGGCAGAAAGGTGGTTCCGTCGCGTTGCGCAGATTAAGGATATCTCTGAGCTCAGTCAGATTCCAGACGAAGATTTTCCTTCAATAATGCCTTTGCGTAAAGGGGTGAATAGATTTGTTGTGAGCAAGAGAAAAACACCATTGGAAAGGAGATTGACGTCTCAGCAGTACCGAAGAAATCTTCCAGTTGTGAGCTCAGATCCTGTTAAAAGAGAAAATGAAGGTAGCTGA 2409 0.4317 MGSAAPRFLFILRHNLRLLSPSFSSHFHHHHHHHHRALFSSFTSSLTPKLKLKLKASQHHQQQHIHTQPSSSSLGGTHPWPEFSSFLSHISSAGYTSTIPSANTFPPTGELSYADVSACLTFARDRPNLLRLLSMRDIAVVVEHGTPFMFSDSDDSVWKMKSFVSNGDSTALDTDKANMVDLMKFMLSYASNCLVSSERNSPYNRNLVESSVRNLFGELFKLSYSAPGPNSFDSEQNQMPGGRFGRTTPPGQNIEMKRGDWICPRCNFMNFARNTKCLECEEARPKRQLTGGEWECPQCDFHNYGRNVACLRCDCKRPGQISLGATNTMSHPGYGNRDNTNASDIDPRLVLNEEKAQRWFNKVSQLDSNSDINSVVDDEDFPEIMPLRKGVNRFVVSTRKTPLENRLTNAQFKRNLGNNDTPGVENLTSWESAKSHDTRDDILGHSTGLPQSDYKNMGAERNFSGERSPSNASNSSHFKDVKGNDTTTLPPFPSYASSGNTDGTELSNNFTSENVNEDKEKEQAEKSERWFRKIGELNDIPDITSAISDDDFPEIMPMRKGENRFVVSKKKDRSLTTPTYKRRLAMEQSGNTNFVPFVPFPPDYFTKKDKPQADGTDSTNRSNVESSSISEVAEMSSDARTRPEQSPEPSSNQSSSNNNHVGSTYAATRSGNSSQGFNQDHVPNLKESSSAGSTSENQSVGTEWEGKSLEGSAVREPDPLDMSEEAKAERWFRRVAQIKDISELSQIPDEDFPSIMPLRKGVNRFVVSKRKTPLERRLTSQQYRRNLPVVSSDPVKRENEGS* 803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1240 802 MobiDBLite consensus disorder prediction 776 802 - -
Tpr6g1240 802 SUPERFAMILY Ran binding protein zinc finger-like 251 286 IPR036443 -
Tpr6g1240 802 MobiDBLite consensus disorder prediction 61 75 - -
Tpr6g1240 802 ProSiteProfiles Zinc finger RanBP2 type profile. 257 286 IPR001876 -
Tpr6g1240 802 MobiDBLite consensus disorder prediction 432 455 - -
Tpr6g1240 802 ProSitePatterns Zinc finger RanBP2-type signature. 294 313 IPR001876 -
Tpr6g1240 802 MobiDBLite consensus disorder prediction 56 75 - -
Tpr6g1240 802 MobiDBLite consensus disorder prediction 495 527 - -
Tpr6g1240 802 ProSitePatterns Zinc finger RanBP2-type signature. 261 280 IPR001876 -
Tpr6g1240 802 MobiDBLite consensus disorder prediction 605 722 - -
Tpr6g1240 802 PANTHER ZINC FINGER PROTEIN 4 801 - -
Tpr6g1240 802 Gene3D - 288 320 - -
Tpr6g1240 802 Gene3D - 250 287 - -
Tpr6g1240 802 ProSiteProfiles Zinc finger RanBP2 type profile. 290 319 IPR001876 -
Tpr6g1240 802 PANTHER ZINC FINGER PROTEIN VAR3, CHLOROPLASTIC 4 801 - -
Tpr6g1240 802 MobiDBLite consensus disorder prediction 495 513 - -
Tpr6g1240 802 MobiDBLite consensus disorder prediction 616 705 - -
Tpr6g1240 802 Pfam Zn-finger in Ran binding protein and others 292 318 IPR001876 -
Tpr6g1240 802 Pfam Zn-finger in Ran binding protein and others 258 285 IPR001876 -
Tpr6g1240 802 SMART zf_4 259 283 IPR001876 -
Tpr6g1240 802 SMART zf_4 292 316 IPR001876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1240 Tpr-Chr6 12822329 12828535 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1240 77 323 EF-hand Containing Proteins AT1G55040 32.890 9.86e-39 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1240 - - cam:101505193 1241.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g1240 6 12822329 12828535 Tpr6g1240 6 12822329 12828535 ECH