Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1239 ATGATGGCCTCTAAGCTTCTTTTGCAGAGAAGGCTCTTCAGGTTCTTGCAACTGTCACCATACTCGTTATGCTCCTTTTCTTCTTCATCTTCCATTCATGGGTCTCCATTTCATTCTGTGAAAGCAACAGAAATCTCGAGTCTCTCAACTTCCTCTAGAAACTTCTGCTCTCAGAAGTCCAATCTTGTTGATCAATTTCATGGCCCCGCACCTATTGATTACAGCTCTCTGCTGCAAGAGGGTGATTTTCATAGATTGGCTGAGTCCACAATACACAACCTTCAAGAGAAATTTGAGGATTATGGAGACTCAATCGACCTTGATGGATTTGACATAGACTATGGGAATGATGTGTTGACTGTCAAACTTGGGGAGCTGGGCACTTATGTATTGAACAAACAAACACCAAATAGACAACTTTGGCTGTCTTCTCCATTGAGCGGTCCATCTAGGTTTGATTGGGATCAGGATACTAAAGCTTGGATTTATAGGCGGAACAAAGCAAAGTTATATAAAATTTTAGAAGACGAGTTGGAGCAGCTGTGTGGTAAAACTATTGTTCTCTCCTAA 570 0.414 MMASKLLLQRRLFRFLQLSPYSLCSFSSSSSIHGSPFHSVKATEISSLSTSSRNFCSQKSNLVDQFHGPAPIDYSSLLQEGDFHRLAESTIHNLQEKFEDYGDSIDLDGFDIDYGNDVLTVKLGELGTYVLNKQTPNRQLWLSSPLSGPSRFDWDQDTKAWIYRRNKAKLYKILEDELEQLCGKTIVLS* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1239 189 CDD Frataxin 78 186 - -
Tpr6g1239 189 Gene3D Frataxin/CyaY 72 189 IPR036524 GO:0008199|GO:0016226
Tpr6g1239 189 TIGRFAM mito_frataxin: frataxin 83 179 IPR017789 GO:0004322|GO:0005739
Tpr6g1239 189 TIGRFAM FeS_CyaY: iron donor protein CyaY 80 187 IPR002908 GO:0008199|GO:0016226
Tpr6g1239 189 SMART Frataxin_Cyay_2 78 189 IPR002908 GO:0008199|GO:0016226
Tpr6g1239 189 SUPERFAMILY Frataxin/Nqo15-like 70 185 IPR036524 GO:0008199|GO:0016226
Tpr6g1239 189 Pfam Frataxin-like domain 79 185 IPR002908 GO:0008199|GO:0016226
Tpr6g1239 189 ProSiteProfiles Frataxin family profile. 78 186 IPR002908 GO:0008199|GO:0016226
Tpr6g1239 189 ProSitePatterns Frataxin family signature. 130 144 IPR020895 -
Tpr6g1239 189 PRINTS Frataxin signature 78 96 IPR002908 GO:0008199|GO:0016226
Tpr6g1239 189 PRINTS Frataxin signature 116 131 IPR002908 GO:0008199|GO:0016226
Tpr6g1239 189 PRINTS Frataxin signature 131 146 IPR002908 GO:0008199|GO:0016226
Tpr6g1239 189 PANTHER FRATAXIN 24 187 IPR002908 GO:0008199|GO:0016226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1239 K19054 - gmx:100815916 269.24