Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1217 ATGGCCAATTTGAATAATCATACCAGAACCACACAATCACAAGTTCAACAGCAAAATCTTCACCCCATTGAGGCACAAGATTCAAGCTTTGTAAACACAACAACAGTGACAGGAGAAACAGTGAGAAAAGTATTCAAGATTCTTTTCTACTTGAATCTGGTCTTGATTTCATTCTTGGTGATTTTCATCACCATCTATGGTCTTATCTTAGACTCTTTAACTCACCATTTCCATCCTGAGAAATGGTACCCTCCAGTTCTAGTATCAACAGTATGTGCAGGAATTCTTGGTTTCACATGGCAATGGATCGTTGCGCGCCACCCGAAAAAGGCACTCAAGGCAGCATTTTGGTTGAGTCCATTGTTAACATGTGCAATGGGAATTCTTTTTGTGTTAATTGGTTCTGCAGTAAGTTTGATAGCTGGTATAGTTTCATTGGTTTCTGCAGTGATTCAATCTCTCTATGGTTGTTGGGTCAGTAAGAGGTTTGTATACGCTGCGGAAATCTTTTCGGTTTCGATAGCTTATCCTCCTGCTAAAACCAAGTTCTTAGCATGTTCGTTGATCATCGTCAGTACTGTTTACTGTTGTTTTCTGGTGGCTGGAATCGGAGGGGCAAGAGCTATCGAAAAAAGAACCAAACTAGCTGACGTTTTCATCTTCGTAATCATCCTGAGCTTAGGATGGACTATGCATGTTATGAAGAATGCAATGCAAGTCACAGTTTCAAGGGTCAAGTATATGCATTTTTCTGGAGGAGGTGACATAGACACCAGGGTAGCATTTCGTGACACGGTCAAGCACTTAATTGGAAGTGTTTGCGTAGGCTCTATCCTCGTTCCGATCATCGGACTCTTCAGAGGCTTTGCGCGATCAACAAGTCTGATTGGAGGAGAAACAAATGAATGCATGTTTTCTTGTGTTAGTTGTTCGATGGGAATTGCGTCGCTTCTTGTGACAAAGGGGAATAGATGGGGTTTTGTTCATGTTGGAGTTTATAACAAAGGTTTTGTGCAAGCATCTTCTGATACTTGGGAAATGTTCATTAGGGTTGGACTAGAGGAATTGATCAACTTTGATCTCACTGGTGCATTCTGTTTTCTTAGTGGTGTTTCAGTAGGTGCAATTTGTAGTCTTGCGAGTGGAATTTGGTGTCTAGTAGAGTACAAGGATTATGCTATGGAAGTATCCACTTATGCTTTCATCATTGGCTATTTCATGTGTAGGTTGGCTATTGCATGGCCACAAGCATGTGTTTCAGCTTATTATGTGGCCTATGCAGAGAATCCACAAAGCACTCAATTTGACTCCACTATTCCAGTACGTTTGGAGCAGCTTCACAGATCTCAAGCTTTACAAGATCTTACTGAGTTAAGAACAATTAGATGA 1389 0.4096 MANLNNHTRTTQSQVQQQNLHPIEAQDSSFVNTTTVTGETVRKVFKILFYLNLVLISFLVIFITIYGLILDSLTHHFHPEKWYPPVLVSTVCAGILGFTWQWIVARHPKKALKAAFWLSPLLTCAMGILFVLIGSAVSLIAGIVSLVSAVIQSLYGCWVSKRFVYAAEIFSVSIAYPPAKTKFLACSLIIVSTVYCCFLVAGIGGARAIEKRTKLADVFIFVIILSLGWTMHVMKNAMQVTVSRVKYMHFSGGGDIDTRVAFRDTVKHLIGSVCVGSILVPIIGLFRGFARSTSLIGGETNECMFSCVSCSMGIASLLVTKGNRWGFVHVGVYNKGFVQASSDTWEMFIRVGLEELINFDLTGAFCFLSGVSVGAICSLASGIWCLVEYKDYAMEVSTYAFIIGYFMCRLAIAWPQACVSAYYVAYAENPQSTQFDSTIPVRLEQLHRSQALQDLTELRTIR* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1217 462 PANTHER F20H23.27 PROTEIN-RELATED 15 450 - -
Tpr6g1217 462 Pfam Plasma-membrane choline transporter 144 430 IPR007603 GO:0022857|GO:0055085
Tpr6g1217 462 PANTHER CHOLINE TRANSPORTER-LIKE (SLC FAMILY 44) 15 450 IPR007603 GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1217 Tpr-Chr6 12423073 12425801 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1217 - - lja:Lj1g3v3981460.1 691.034