Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1212 ATGCTAGCATGTAGCACCTTCCATGGCCCTTCCACATTCCACCGCCATTCTCAACCTTCTAAATTCCTACTCTCCAAGCCTATCCTCTTCTCTCCTCGTCCTCGCTTCACCACTTTCGGTGGTAAATTAAAGTTCCGTTCTCTGTTTTCCAGTAAAAATCGCCGTCACAGTTTCGGTATCAAAGCTTCTGTTGACTCATCGTCGGAGGTTTTAGAGTCAATTGATGTTGATGGCCCGCACATTGGACCACAACGGTATTCCGTCAAGATTCCCGTTGGTGATAGACATATTTTGGTTGAGACTGGTCATATGGGAAGGCAAGCAAGTGGTTCTGTTACTGTTACGGATGGAGAGACTGTTTTGTACACCACTGTTTGTTTGTCTGATACTCCTAGCGAGCCATCCGATTTTTTCCCTCTTTCTGTGAATTATCAAGAGCGTTTTTCAGCTGCTGGTCGCACTAGCGGAGGTTTTTTTAAACGAGAAGGAAAGACAAAGGATCACGAGGTTCTTATTTGTAGATTAATTGATAGGCCTCTGCGTCCTACTATGCCTAAGGGCTTCTACCACGAAACTCAAATATTATCTTGGGTTTTAAGCTATGATGGAATGCATATCCCCGATTCCTTGGCTGTCACTGCAGCTGGCATAGCACTTGCACTTTCAGAAGTGCCTATGTCAAAAGCAGTTGCTGGAGTTCGAGTTGGTCTCGTTGGTGATAAGTATATAGTAAATCCTACAAATGAGGAGATGGAAAACTCTGAGTTGGACCTCATGCTGGCTGGCACAGATAGTGCAATATTGATGATAGAGGGTTATGGGAATTTTCTTCCAGAAGAGAAGCTACTTAAAGCTGTAGAAGTTGGTCAGGATGCAGTGCGAGCAATCTGTAATGAGGTAGAAGCCTTGGTCAAGAAATGTGGGAAGCCAAAGATGATTGATGCCATCAAGTTACCTCCTCCAGAGCTTTATAAACATGTTGAGGAAATTGCTGGTGATGAGTTGATAAAAGCTCTTCAAATTAGAAACAAAATACCAAGAAGGAAAGCCCTTTCATCATTAGAAGAAAAGGTTCTTAAGATACTTACAGAAAATGGGTATGTCGCAAATGATTCAGCACCAAGTAGTAATGCTGAAACCATCGCAGAGATTCTTGAGGATGAGGATGAAGACGAGGAAGTAATTGTTGATGGTGAAGTTGATGAAGGTGATGTTCATATAAAGCCCACTCCACGCAAACCAACACCTTTATTTTCTGAGGTAGATGTGAAGTTGGTATTTAAAGAAGTTACCTCCATGTTTTGGAGGAAACGTATAGTGGAGGGAGGGAAAAGGAGCGACGGGAGAACGCCACACGAAATCCGACCAATTAACTCAAGTTGTGGCCTATTGCCTAGAGCACACGGAAGTGCTCTGTTTACGAGGGGCGAGACACAGTCGCTAGCTGTTGCTACACTCGGAGATAGCAAGATGGCACAACGAGTAGACAATCTTATAGGTGTTGATGATTACAAAAGGTTCTATCTGCAGTATTCGTTTCCTCCCTCGTGTGTTGGGGAGGTTGGCCGGATTGGTGCACCGAGTAGAAGAGAAATTGGTCACGGGATGCTTGCTGAGAGATCCCTTGAAACAATTTTGCCTTCTGATAAAGATTTCCCTTACACTATTCGTGTTGAGAGTACTATCACAGAAAGCAATGGTTCTTCAAGCATGGCATCTGTTTGTGGAGGTTGCTTAGCCTTGCAAGATGCTGGGGTTCCTATTAAATGCTCTATTGCTGGAATTGCAATGGGTTTGGTTCTTGATACCAAGGAATTTGGTGGAGATGGAACTCCGCTTATTCTGTCTGACATAACTGGATCGGAAGATGCATCTGGAGATATGGATTTTAAGGTTGCTGGGAATGAAAATGGCATAACTGCATTTCAGATGGACATTAAGGTGGGTGGAATTACTTTGCCCATCATGAAAGAAGCACTGCTACAGGCAAGAGACGGCAGGAAACACATACTTGGAGAAATGATGAAATGCTCGCCCCCTCCAGCAAAAAGCCTTTCCATGTATGCTCCTCTGATTCACATTATGAAGGTTAGACCCGATAAAGTAAATCTTATAATCGGTTCCGGTGGGAAAAAAGTGAGGAGCATTATTGAGCAATCTGGAATAGAGGGTATTGATGCTGAAGATGACGGCACTGTGAAAATATTTGCGAGAGATTTGGCTGGTTTAGAGAAGTCTAAGGCTATCATTAGTAATTTAACAATGGTTCCAAATATTGGTGATATATATAGGAACTGTGAAATAAAATCAATAGTTCCATATGGAGTTTTTGTAGAGATAGCACCTGGACGAGAGGGACTTTGCCATATTAGTGAACTGAGTTCAGGTTGGCTAGCTAAGCCAGAAGATGCTTTCAAGGTGGGAGATCGTATTGATGTAAAACTCAAAGAGATAAATGAAAAGGGACAGTTGCGTCTAAGTTACCGAGCAATGCTTCCAGATGCAGATTCAGACAGTTCAAATTCAAGTGATGAGGGTTCGTCGGAAGAAGTTACCAGCCTGACAAATGCTGGTTTAGTTGAAGATAAGGTTAAGACACCTAAAGGCACAGCCTCATCTAAAAGAAGTTCAGAGGACAATTCTGTACTTCCATCAAAAAAGTTTATCAGGAGATCGGTAAGCCCTTCCCAAGAGAAGCCGATCTCGAACAAAGACAAGATAAAGAAGAGCGGCAACAAAGCAGTCAGCAGTGTCTCTAGCAAAGATGAAAATAGTTTGGTTGGTGACGAGGCATAA 2796 0.4292 MLACSTFHGPSTFHRHSQPSKFLLSKPILFSPRPRFTTFGGKLKFRSLFSSKNRRHSFGIKASVDSSSEVLESIDVDGPHIGPQRYSVKIPVGDRHILVETGHMGRQASGSVTVTDGETVLYTTVCLSDTPSEPSDFFPLSVNYQERFSAAGRTSGGFFKREGKTKDHEVLICRLIDRPLRPTMPKGFYHETQILSWVLSYDGMHIPDSLAVTAAGIALALSEVPMSKAVAGVRVGLVGDKYIVNPTNEEMENSELDLMLAGTDSAILMIEGYGNFLPEEKLLKAVEVGQDAVRAICNEVEALVKKCGKPKMIDAIKLPPPELYKHVEEIAGDELIKALQIRNKIPRRKALSSLEEKVLKILTENGYVANDSAPSSNAETIAEILEDEDEDEEVIVDGEVDEGDVHIKPTPRKPTPLFSEVDVKLVFKEVTSMFWRKRIVEGGKRSDGRTPHEIRPINSSCGLLPRAHGSALFTRGETQSLAVATLGDSKMAQRVDNLIGVDDYKRFYLQYSFPPSCVGEVGRIGAPSRREIGHGMLAERSLETILPSDKDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGIAMGLVLDTKEFGGDGTPLILSDITGSEDASGDMDFKVAGNENGITAFQMDIKVGGITLPIMKEALLQARDGRKHILGEMMKCSPPPAKSLSMYAPLIHIMKVRPDKVNLIIGSGGKKVRSIIEQSGIEGIDAEDDGTVKIFARDLAGLEKSKAIISNLTMVPNIGDIYRNCEIKSIVPYGVFVEIAPGREGLCHISELSSGWLAKPEDAFKVGDRIDVKLKEINEKGQLRLSYRAMLPDADSDSSNSSDEGSSEEVTSLTNAGLVEDKVKTPKGTASSKRSSEDNSVLPSKKFIRRSVSPSQEKPISNKDKIKKSGNKAVSSVSSKDENSLVGDEA* 932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1212 931 Pfam S1 RNA binding domain 766 829 IPR003029 GO:0003676
Tpr6g1212 931 CDD S1_PNPase 760 828 - -
Tpr6g1212 931 SUPERFAMILY Nucleic acid-binding proteins 754 833 IPR012340 -
Tpr6g1212 931 CDD RNase_PH_PNPase_1 86 312 - -
Tpr6g1212 931 SUPERFAMILY Ribonuclease PH domain 2-like 581 684 IPR036345 -
Tpr6g1212 931 Pfam 3' exoribonuclease family, domain 2 229 291 IPR015847 -
Tpr6g1212 931 Pfam 3' exoribonuclease family, domain 2 592 665 IPR015847 -
Tpr6g1212 931 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 685 754 IPR036612 GO:0003723
Tpr6g1212 931 SUPERFAMILY Ribonuclease PH domain 2-like 227 312 IPR036345 -
Tpr6g1212 931 MobiDBLite consensus disorder prediction 834 855 - -
Tpr6g1212 931 SMART S1_6 758 829 IPR022967 -
Tpr6g1212 931 SUPERFAMILY Ribosomal protein S5 domain 2-like 426 623 IPR020568 -
Tpr6g1212 931 MobiDBLite consensus disorder prediction 832 931 - -
Tpr6g1212 931 SMART kh_6 689 754 IPR004087 GO:0003676
Tpr6g1212 931 Gene3D - 80 310 IPR027408 -
Tpr6g1212 931 ProSiteProfiles Type-1 KH domain profile. 690 750 - -
Tpr6g1212 931 Gene3D - 760 831 IPR012340 -
Tpr6g1212 931 PANTHER POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE 1, CHLOROPLASTIC 68 897 - -
Tpr6g1212 931 PANTHER POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE 68 897 IPR012162 GO:0003723|GO:0004654|GO:0006402
Tpr6g1212 931 CDD RNase_PH_PNPase_2 453 681 - -
Tpr6g1212 931 Gene3D K Homology domain, type 1 687 759 IPR036612 GO:0003723
Tpr6g1212 931 SUPERFAMILY Ribosomal protein S5 domain 2-like 87 225 IPR020568 -
Tpr6g1212 931 Pfam 3' exoribonuclease family, domain 1 95 225 IPR001247 -
Tpr6g1212 931 Pfam 3' exoribonuclease family, domain 1 453 587 IPR001247 -
Tpr6g1212 931 Hamap Polyribonucleotide nucleotidyltransferase [pnp]. 84 832 IPR012162 GO:0003723|GO:0004654|GO:0006402
Tpr6g1212 931 Gene3D - 407 686 IPR027408 -
Tpr6g1212 931 SUPERFAMILY Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 320 450 IPR036456 GO:0003723|GO:0006396
Tpr6g1212 931 TIGRFAM polynuc_phos: polyribonucleotide nucleotidyltransferase 419 830 IPR012162 GO:0003723|GO:0004654|GO:0006402
Tpr6g1212 931 CDD PNPase_KH 690 750 - -
Tpr6g1212 931 ProSiteProfiles S1 domain profile. 760 829 IPR003029 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1212 Tpr-Chr6 12354576 12376385 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1212 K00962 - gmx:100785430 1355.12