Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1190 ATGGACTTCAATCACTACCTCTCCGAGCTTTCCACTTCCATCCAATCAATTCCTTCCTCCGACGACTTCCGTTTCAACTACAACATCCCCGAATTCCGTCGCCTCATCGACGAACTCACCAGAAAATCCCAATCAATGTTGAACAAAATCGGTTCCTCCGATCACATTTGGGGTCCAGGTTCATCTTTCCCTGCTGACATCGACGATGCTTATGAATGGATTGTTAATGCAAACGACGACGTTTTGGAACTTGTTAATGAGGTTGTGGATGAGTTTCATAAGGTTTTGAAGGAGCAAGATATGGAAGAAGGGGAAGATGGGTTTTTTAAGATTAAGAAGGGGAAGAAAGGGATTGGTTATTTTGGTGATGATGGGAATGAAATGAAACCGAAAGTTTCGTTTCATGTTCATACTCTTAGGAAGCCTCAGTATCATTATAATCTTGCTGTTGATAATTCGAATCAGCCTTTTGAACATGTCTGGTTGGAGAAAAGTGAAGATGGTGAAAGGTTTATACATCCACTGGAGAAACTCTCTGTTTTAGATTTTGTTGATAAAGATATTGAGAATCTTGTACCACTGAAGCCTCCCCCAATGGAATGCACACCTTTCAAGCTTGTGGAAGAAGTCAATGGATTGAAGGAGTTGGCTGCTAAGCTGAGTTCCGTTAATGAATTTGCGGTGGATTTGGAACATAATCAATATCGGTCTTTTCAAGGTTTGACTTGCTTGATACAAATATCAACCCGGACTGAAGATTTTATTGTCGATACTCTGAAGCTCCGTGATCATGTTGGGACACACCTGAGGGAAGTTTTCAAGGACCCTACCAAGAAAAAGGTCTTGCATGGAGCAGATCGAGACATTGTGTGGCTACAACGGGATTTTGGCATTTATGTCTGTAATATGTTTGACACTGGGCAGGCTTCAAGGGTGTTAAAAATGGAGAGATATAGTTTGCAACATCTTTTACAACACTTTTGTGGGGTTACAGCAAACAAAGAGTACCAGAATGCAGACTGGAGAGCGCGCCCTCTTCCTGATGTGATGATAAAATATGGAAGAGAAGATACCCACTATCTGCTTTATATATATGATTTAATGAGAATCAAGCTATTTGAACTGTCTAAGGAGTCTGAAAGTCCCGATGATCCTCTGTTGGACGTTTACAAGCGAAGTTATAATGTTTGCATGCAGCTGTACGAGAAAGAGCTTTTGACTGACAACTCCTACCTTAATTTAAAGGGGTTGCGAAGGGCTGGTTTTAATGGTCAGCAGCTTGCCGTTGTTTCAGGGCTTTATGAATGGCGTGATGTTCTTGCTCGGGCAGAGGATGAGAGTACTGGGTATATATTGCCAAATAAAGTTATTCTTGAAATTGCTAAGCATATGCCCGTCACTGCAAGCAATCTACGGCGATTGATAGCGGAGAGGTCAAGGCTCCCATATGTTGAGCGCAATCATGATATTGTTGTTAACATTGTCAGACATTCTATGCAAAATGCTGAAGCCTTTGAAGAAGCCGCACTTCGTTTGAAAGAAGAACAGGCTGCCTTTGAAGAAGCTGCACTTCGTTTGAAAGAAGAACAGGCAGCGAGTGTGTCAAATGTAGCATCTGTTAAGGATGGAACTGAAGCTCCCCAATCTCATTCCTCAAACTCAAAGGATGAATGTGCAGCAAATGGAAGCATTGGAATTGAAAATGGCACTATTGCCTCTACATTGAAGGAAAATGGAGCAAATACTGGTGCTTGCGAAGCAACGCTGCTTGGCAATTCAGTTTCAGAAGAGAATGGTTTTCCTGACAAAAAGGGCAAGAAAGACATCAAGGTAGAACAGATTGGATCATCAGTCAATCTTCCATGCCATTCAATTTTGGGCAACAATGCGAAGTGTACCATAACAGTAGACTTGGATTCTGACTCCGACGATATGATGTAG 1941 0.4189 MDFNHYLSELSTSIQSIPSSDDFRFNYNIPEFRRLIDELTRKSQSMLNKIGSSDHIWGPGSSFPADIDDAYEWIVNANDDVLELVNEVVDEFHKVLKEQDMEEGEDGFFKIKKGKKGIGYFGDDGNEMKPKVSFHVHTLRKPQYHYNLAVDNSNQPFEHVWLEKSEDGERFIHPLEKLSVLDFVDKDIENLVPLKPPPMECTPFKLVEEVNGLKELAAKLSSVNEFAVDLEHNQYRSFQGLTCLIQISTRTEDFIVDTLKLRDHVGTHLREVFKDPTKKKVLHGADRDIVWLQRDFGIYVCNMFDTGQASRVLKMERYSLQHLLQHFCGVTANKEYQNADWRARPLPDVMIKYGREDTHYLLYIYDLMRIKLFELSKESESPDDPLLDVYKRSYNVCMQLYEKELLTDNSYLNLKGLRRAGFNGQQLAVVSGLYEWRDVLARAEDESTGYILPNKVILEIAKHMPVTASNLRRLIAERSRLPYVERNHDIVVNIVRHSMQNAEAFEEAALRLKEEQAAFEEAALRLKEEQAASVSNVASVKDGTEAPQSHSSNSKDECAANGSIGIENGTIASTLKENGANTGACEATLLGNSVSEENGFPDKKGKKDIKVEQIGSSVNLPCHSILGNNAKCTITVDLDSDSDDMM* 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1190 646 SUPERFAMILY HRDC-like 405 503 IPR010997 GO:0000166|GO:0044237
Tpr6g1190 646 PANTHER 3'-5' EXONUCLEASE 1 642 - -
Tpr6g1190 646 Pfam HRDC domain 426 474 IPR002121 GO:0003676
Tpr6g1190 646 ProSiteProfiles HRDC domain profile. 423 505 IPR002121 GO:0003676
Tpr6g1190 646 MobiDBLite consensus disorder prediction 535 557 - -
Tpr6g1190 646 PANTHER POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED 1 642 IPR045092 GO:0000175|GO:0000467
Tpr6g1190 646 Gene3D - 131 411 IPR036397 GO:0003676
Tpr6g1190 646 CDD Rrp6p_like_exo 200 392 - -
Tpr6g1190 646 Gene3D HRDC domain 412 507 IPR044876 -
Tpr6g1190 646 Coils Coil 502 532 - -
Tpr6g1190 646 Pfam PMC2NT (NUC016) domain 15 93 IPR012588 GO:0000176|GO:0006396
Tpr6g1190 646 SMART hrdc7 423 504 IPR002121 GO:0003676
Tpr6g1190 646 Pfam 3'-5' exonuclease 207 369 IPR002562 GO:0003676|GO:0006139|GO:0008408
Tpr6g1190 646 SMART 35exoneu6 204 373 IPR002562 GO:0003676|GO:0006139|GO:0008408
Tpr6g1190 646 SUPERFAMILY Ribonuclease H-like 140 418 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1190 Tpr-Chr6 12083730 12094335 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1190 K12591 - gmx:100804872 803.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g1190 6 12083730 12094335 Tpr6g1190 6 12083730 12094335 ECH