Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1182 ATGGCTTCTTCTCGTGTAGTCTTCATAGCAATTTCCATGGTTTTGCTATCCTCAGTTGCATTGGCAGCTGATCATATTGTGGGTGAAGATAAGGGCTGGACTGTTGATGTCAATTACACTCAATGGGCTCAGGAGATGGTTTTTCGTGTTGGCGACAACCTTGTTTTCAACTATGACCCTTCAAGACACAATGTTTTCAAAGTGAACGGAACACTTTTTCAGAGCTGCACTTTTCCTCCAGCAAACGAAGCACTTTCCACCGGAAAAGATATCATTCAATTAAAAACAGAAGGAAGAAAGTGGTATGTTTGTGGTATAGCTGATCATTGTTCTACTCGTCAAATGAAGTTTGTCATCACTGTTCTACCAGAAGCTGCACCTGCTCCTTCTCCTCCACCTTCTTCGGTGGCTCACTCTGTTGTATCATCTGTGTTTGGTGTCGTCATGGCAACCATGGTTGCAATTGGAGTCATCTTTGCATGA 483 0.4306 MASSRVVFIAISMVLLSSVALAADHIVGEDKGWTVDVNYTQWAQEMVFRVGDNLVFNYDPSRHNVFKVNGTLFQSCTFPPANEALSTGKDIIQLKTEGRKWYVCGIADHCSTRQMKFVITVLPEAAPAPSPPPSSVAHSVVSSVFGVVMATMVAIGVIFA* 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1182 160 CDD Phytocyanin 23 121 - -
Tpr6g1182 160 SUPERFAMILY Cupredoxins 22 122 IPR008972 -
Tpr6g1182 160 Gene3D - 21 126 IPR008972 -
Tpr6g1182 160 Pfam Plastocyanin-like domain 33 112 IPR003245 GO:0009055
Tpr6g1182 160 PANTHER BLUE COPPER PROTEIN 4 155 IPR039391 GO:0009055
Tpr6g1182 160 PANTHER PLASTOCYANIN-LIKE DOMAIN PROTEIN 4 155 - -
Tpr6g1182 160 ProSiteProfiles Phytocyanin domain profile. 23 123 IPR003245 GO:0009055
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1182 Tpr-Chr6 11939778 11940555 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1182 3 132 Miscellaneous Gene Families AT2G32300 36.364 1.51e-24 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1182 - - mtr:MTR_7g086160 245.743