Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1176 ATGCAGACAACAAGAACGGTTCAAGTGAAGCAACTTTCAGATCTAGCTACTGAGAGAGAGATTCATGAATTCTTCTCATTTTCTGGTGAAATTGAACATATTCAGATCGTTAGAGAATATGGGAAACCAAAGACTGCATTTGTGACATTTAAAGATCCTAAAGCACTTGAAATCGCGTTATTGTTATCGGGAGCAACAATAGTAGACCAGATTGTGAGTATAAGTCCGGCTGACAACTATGTTGCAAATCATGAGATGCAGGAAGAAAGAGTGGTGGAATATGCTATAAATGTTGCTCCTGAAGATGGCGCGTCGAATACTGAGGAGGAGAAACCAGGTGGAAGAATTTATCTTAGTAAAGCACAAGATGTAGTTACAAGTATGCTGGCTAAAGGATCAGCGATAAGACAAGATGCCGTGAACAAAGCTAAAGCATTTGATGAGAAGCATCAGTTGACTGCCAATGCTTCGGCAAAGGTCAGTTCTTTTGACAAGAGAGTTGGACTGACGGAGAAATTGACAGTTGGACTTTCTGTAGTGAATGAGAAAGTGAAATCTGTGGATCAGAGGCTACATGTTTCAGATAAAACAATGGCAGCAATATTTGCAGCCGAGAGGAAGTTGAACGATACTGGATCAGCTGTCAAAACAAGCAGATATGTGACTGCCGGAACATCATGGTTAACTGGTGCATTTAGCAAAGTGGCAAAAGCCGGAAACGTTGCTGGAACTAAAACTAGAGAGAAGTTTAATATGGCTGTTTCAAACTTGACAACAAAGGAACCCACATTGGTTGTATAG 801 0.407 MQTTRTVQVKQLSDLATEREIHEFFSFSGEIEHIQIVREYGKPKTAFVTFKDPKALEIALLLSGATIVDQIVSISPADNYVANHEMQEERVVEYAINVAPEDGASNTEEEKPGGRIYLSKAQDVVTSMLAKGSAIRQDAVNKAKAFDEKHQLTANASAKVSSFDKRVGLTEKLTVGLSVVNEKVKSVDQRLHVSDKTMAAIFAAERKLNDTGSAVKTSRYVTAGTSWLTGAFSKVAKAGNVAGTKTREKFNMAVSNLTTKEPTLVV* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1176 266 Gene3D - 1 91 IPR012677 -
Tpr6g1176 266 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 5 79 IPR000504 GO:0003723
Tpr6g1176 266 SMART rrm1_1 6 75 IPR000504 GO:0003723
Tpr6g1176 266 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 3 265 - -
Tpr6g1176 266 SUPERFAMILY RNA-binding domain, RBD 3 82 IPR035979 GO:0003676
Tpr6g1176 266 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 67 IPR000504 GO:0003723
Tpr6g1176 266 PANTHER RNA BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN-RELATED 3 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1176 Tpr-Chr6 11892085 11895488 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1176 - - zju:107433520 400.979
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g1176 6 11892085 11895488 Tpr6g1176 6 11892085 11895488 ECH