Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1175 ATGGAAGTAGCTATTTGTCCACATGCACAGAAGCAGAATTCGCCGACAACAGGTCGCAAAGGTAGTCCTGGATCCCAAAAAGATTTGTGGCTTGTTGTGCGAGAAGGATCTCTGAATGATGTAGAGTCAGCATTGACATCAATAAAAAAGAGTGGGGGCAATATCAATGCGAGGAATACCTTCGGGCTTACTCCTCTTCATGTTGCAGCTTGGAGAAACCACATTCCCATTGTAAGGAGGCTTCTTGCGGCTGGTGCAGATCCTGATGCTAGAGATGGAGAATCAGGATGGAGTAGCCTTCATAGGGCTCTGCATTTTGGTCATCTTGCTGTTGCAAGCATCCTTCTTCAGCATGGTGCCTCGATTACATTGGAGGACTCTAAATCTCGAATACCTATAGATCTCTTATCTGGAAACGTGTTTCAGGTTGTTGGAAATGAACACAGTTCAGTTGCTACTGAGGTATTTAGTTGGGGAAGTGGTGCAAATTATCAGCTTGGAACTGGAAATGCACATATTCAAAAGCTACCATGCAAAGTTGATTCACTTAATGGCTCGATTATTAAGCTGATTTCTGCGGCGAAGTTCCACAGTGTTGCACTGACTGATCGTGGAGAAGTGTATACTTGGGGATTTGGAAGGGGCGGCCGTCTTGGGCATCCTGATTTTGACATACATAGTGGTCAAGCTGCCATCATCACTCCCCGCCAGGTGACTACTGGTTTGGGTTCTCGCAGAGTTATGGCAATTGCTGCAGCGAAGCATCATACTGTTATTGCTACTCAGGGCGGGGAAGTGTTCACTTGGGGATCCAATAGAGAGGGGCAGCTAGGGTACACTTCTGTTGATACACAACCCACACCTCGTAGAGTATCTTCTTTGAGGTCAAGAATTGTTGCCATTGCTGTAGCAAACAAACACACGGCTGCAGTTTCTGATTTAGGTGAAGTTTTTACTTGGGGTTGCAATAGAGAGGGTCAGCTTGGTTACGGCACCTCTAACTCGGCCTCTAACTACACCCCACATGTGGTCGAATCCTTGAAGGGAAAGACCTTGACCAAAGTTTCTGCTGCCAAATATCATACAATTGTATTAGGATCTGACGGAGAGGTATTTACCTGGGGTCATCGACTTGTTACTCCAAAACGTGTAGTGATTACTAGGAATTTAAAGAAAAGTGGAAGCACTCCTTTAAAGTTTCATCTCAAGGAACGACTTCATGTAGTTTCTATAGCTGCTGGAATGGTACACAGCACGGCTCTTACAGAAGATGGTGCATTATTTTATTGGGTCTCATCAGATCCTGATCTTAGATGCCAACAGTTATATGCTATGTGCGGAAGAAATATGGTTAACATATCTGCTGGAAAGTACTGGACTTCAGCAGTTACAGCTACTGGTGATGTTTACATGTGGGATGGGAAGAAAGGTAAGGATAAGCCGCTTATTGCAACTCGGATGCACGGTGTAAAGAAGGTTACTTCAGTTTCAGTTGGCGAAACACATTTATTAATTGTGGCTTCCCTTTATCATCCTGCCTATCCTATCAACATGATTGATAATTCTCAGAAGCTCAAGTTGAATAGCAGAAATAGTACGGAAGAGTTAAATGAAGACATTTTATTTGAAGATACTGATTCCAATAATACAACATATACGGTTCAAAATGATAATCTTAGACAGAGATCTACTCCTAGCTTAAAAAGTCTTTGTGAAAAAGTTGCAGCAGAGTCTCTACTGGAGCCACGGAATGCCATACAATTGCTTGAGATTGCTGATTCTCTTGGAGCAGATGATTTGAAGAAATATTGCGAGGACATTGTTATGCGCAACCTTGATTATATATTTTCAGTTTCAACACATGCTGTAGCAACTGCAGCACTAGATGTTCTTGCGAACCTTGAGAAATTGTTCGACCAGAGATCATCTGAGCCTTGGAGTTATCGACGACTCCCTACCCCAACTGCTACACTCCCTGTCATCATTGACAGTGAAGAGGATGATAATGAGATAGAGTATCAAAGGACCTGCGACATACCCACAAAAATGTCTGCACTGAAATTGGAAAGACAAGATTCCTTTCTACAGCCCAAGGATGATTCTGATAGTGAAATCTCCAAAGTAGTTCGTGCTATAAGGAAGAAGTTGCAGCAGATTGAGATGCTTGAAACTAAGCAGTCTAAAGGACATCTTCTCGATGACCAGCAGATCGCAAAACTTAAGTCTAAACCAGTACTTGAGAGCTCACTTGTAGAGCTAGGTATTCCTGTCGAGACTTCACAGAATAGAGAGTCATCTTCTATGCTACCAGAAGGGAAAGGTAATAAGAAAGGTAAATCAACAAAAAAACAAAGGAAAAAGAGTAGCAACAAATCAAGCATAGAGCAGACAGAAACAGAATCTGTTTATTCTAAAAGTGAAGTGATCCCCGAGTCTGAAGACCTGCTGGATATTGACATCCTGACCTCTCCTAATTCAAAGGTGGAAGAGGATATCTGTAAACATTCAACAGCAGACCAGGGTGAAAAAGATTTAACTTTTGTTGTACAGAAGAAAGATGCTTCAGAGTTGCTGAACGGCAAGGGTCCGTCACCCAAGGTCTCTAAGAAGAAGAACAAGAAGGGTGGTCTTTCTATGTTTCTGAGTGGTGCTCTTGATGAAGCCCCCAAAGAGGTGTCTCCCCCTCCACCACCGACACCAAAAAATGATGGTCCTGCATGGGGCGGGGCCAAGTTTTTGAAGGGTTCTACTTCTCTTCGTGAAATCCAGGATGAGCAGAGCAAAATAATGGGTAACAAGCCAGCTGGGGTTAAAGACAAGGTGGAAGATCCTACTGATTTTGGCAGTGCGGGGAAAATAAAGTTGAGTTCATTTCTTCATTCTAGCCCGATACCTGTTGTGACAACTCGAAGTCCTCAGGCATCTGATGGAGATAAAAACACCCCTCCTTGGGCTGCTCCAGTAACCCCTCCTCAAACCTCTAGGCTGTCTTTAAGGGACATCCAAATGCAACAGGTCAAGAAACAGCAAGGCCTATCCAGCAGTCCAAAAACTAGAACTGCTGGATTCACTATAGCTACTGGTCAAGGCTCGCCATCCGAAGCAACTGGGATGAACCGTTGGTTCAGGCCCGAAGTTGAAACACCATCCTCGATTCGTTCGATTCAAATCGAGGAAAAAGCTATGAAAGATCTCAAACGTTTCTATACCAGTGTCAAGATTGTCAAAAAGCAGCAATGTTAA 3243 0.4348 MEVAICPHAQKQNSPTTGRKGSPGSQKDLWLVVREGSLNDVESALTSIKKSGGNINARNTFGLTPLHVAAWRNHIPIVRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASILLQHGASITLEDSKSRIPIDLLSGNVFQVVGNEHSSVATEVFSWGSGANYQLGTGNAHIQKLPCKVDSLNGSIIKLISAAKFHSVALTDRGEVYTWGFGRGGRLGHPDFDIHSGQAAIITPRQVTTGLGSRRVMAIAAAKHHTVIATQGGEVFTWGSNREGQLGYTSVDTQPTPRRVSSLRSRIVAIAVANKHTAAVSDLGEVFTWGCNREGQLGYGTSNSASNYTPHVVESLKGKTLTKVSAAKYHTIVLGSDGEVFTWGHRLVTPKRVVITRNLKKSGSTPLKFHLKERLHVVSIAAGMVHSTALTEDGALFYWVSSDPDLRCQQLYAMCGRNMVNISAGKYWTSAVTATGDVYMWDGKKGKDKPLIATRMHGVKKVTSVSVGETHLLIVASLYHPAYPINMIDNSQKLKLNSRNSTEELNEDILFEDTDSNNTTYTVQNDNLRQRSTPSLKSLCEKVAAESLLEPRNAIQLLEIADSLGADDLKKYCEDIVMRNLDYIFSVSTHAVATAALDVLANLEKLFDQRSSEPWSYRRLPTPTATLPVIIDSEEDDNEIEYQRTCDIPTKMSALKLERQDSFLQPKDDSDSEISKVVRAIRKKLQQIEMLETKQSKGHLLDDQQIAKLKSKPVLESSLVELGIPVETSQNRESSSMLPEGKGNKKGKSTKKQRKKSSNKSSIEQTETESVYSKSEVIPESEDLLDIDILTSPNSKVEEDICKHSTADQGEKDLTFVVQKKDASELLNGKGPSPKVSKKKNKKGGLSMFLSGALDEAPKEVSPPPPPTPKNDGPAWGGAKFLKGSTSLREIQDEQSKIMGNKPAGVKDKVEDPTDFGSAGKIKLSSFLHSSPIPVVTTRSPQASDGDKNTPPWAAPVTPPQTSRLSLRDIQMQQVKKQQGLSSSPKTRTAGFTIATGQGSPSEATGMNRWFRPEVETPSSIRSIQIEEKAMKDLKRFYTSVKIVKKQQC* 1081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1175 1080 PRINTS Ankyrin repeat signature 62 77 IPR002110 GO:0005515
Tpr6g1175 1080 PRINTS Ankyrin repeat signature 111 125 IPR002110 GO:0005515
Tpr6g1175 1080 MobiDBLite consensus disorder prediction 1006 1039 - -
Tpr6g1175 1080 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 205 263 IPR000408 -
Tpr6g1175 1080 MobiDBLite consensus disorder prediction 757 940 - -
Tpr6g1175 1080 MobiDBLite consensus disorder prediction 828 850 - -
Tpr6g1175 1080 MobiDBLite consensus disorder prediction 1 26 - -
Tpr6g1175 1080 MobiDBLite consensus disorder prediction 1006 1036 - -
Tpr6g1175 1080 MobiDBLite consensus disorder prediction 964 978 - -
Tpr6g1175 1080 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 1 1078 - -
Tpr6g1175 1080 PRINTS Chromosome condensation regulator RCC1 signature 154 170 IPR000408 -
Tpr6g1175 1080 PRINTS Chromosome condensation regulator RCC1 signature 188 201 IPR000408 -
Tpr6g1175 1080 PRINTS Chromosome condensation regulator RCC1 signature 207 223 IPR000408 -
Tpr6g1175 1080 PRINTS Chromosome condensation regulator RCC1 signature 264 280 IPR000408 -
Tpr6g1175 1080 PRINTS Chromosome condensation regulator RCC1 signature 301 317 IPR000408 -
Tpr6g1175 1080 PRINTS Chromosome condensation regulator RCC1 signature 317 331 IPR000408 -
Tpr6g1175 1080 PRINTS Chromosome condensation regulator RCC1 signature 414 432 IPR000408 -
Tpr6g1175 1080 ProSiteProfiles Ankyrin repeat profile. 61 93 IPR002110 GO:0005515
Tpr6g1175 1080 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 315 368 IPR000408 -
Tpr6g1175 1080 ProSiteProfiles Ankyrin repeat region circular profile. 61 92 - -
Tpr6g1175 1080 MobiDBLite consensus disorder prediction 9 23 - -
Tpr6g1175 1080 MobiDBLite consensus disorder prediction 964 994 - -
Tpr6g1175 1080 Pfam Regulator of chromosome condensation (RCC1) repeat 205 259 IPR000408 -
Tpr6g1175 1080 Pfam Regulator of chromosome condensation (RCC1) repeat 154 201 IPR000408 -
Tpr6g1175 1080 Pfam Regulator of chromosome condensation (RCC1) repeat 264 311 IPR000408 -
Tpr6g1175 1080 Pfam Regulator of chromosome condensation (RCC1) repeat 315 365 IPR000408 -
Tpr6g1175 1080 ProSiteProfiles Ankyrin repeat region circular profile. 95 126 - -
Tpr6g1175 1080 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 153 204 IPR000408 -
Tpr6g1175 1080 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 264 314 IPR000408 -
Tpr6g1175 1080 SUPERFAMILY RCC1/BLIP-II 405 506 IPR009091 -
Tpr6g1175 1080 Gene3D - 120 387 IPR009091 -
Tpr6g1175 1080 Gene3D - 388 509 IPR009091 -
Tpr6g1175 1080 Pfam Ankyrin repeats (3 copies) 45 126 IPR002110 GO:0005515
Tpr6g1175 1080 SUPERFAMILY RCC1/BLIP-II 118 430 IPR009091 -
Tpr6g1175 1080 SUPERFAMILY Ankyrin repeat 47 135 IPR036770 -
Tpr6g1175 1080 CDD BACK 582 617 - -
Tpr6g1175 1080 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 369 424 IPR000408 -
Tpr6g1175 1080 PANTHER ANKYRIN REPEAT FAMILY PROTEIN / REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN 1 1078 - -
Tpr6g1175 1080 Gene3D - 25 118 IPR036770 -
Tpr6g1175 1080 ProSiteProfiles Ankyrin repeat profile. 95 127 IPR002110 GO:0005515
Tpr6g1175 1080 SMART ANK_2a 95 124 IPR002110 GO:0005515
Tpr6g1175 1080 SMART ANK_2a 61 90 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1175 Tpr-Chr6 11873869 11881445 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1175 32 135 Acyl Lipid Metabolism Gene Families AT5G53470 37.500 1.16e-09 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1175 K24810 - gmx:100800604 1743.4