Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1124 ATGATAAGAATCAGATCTAAACTATCGGTATTCACTGTTGTGTTATCACACATAAGGAAAAACCCATTCACTGTTAATCACTGTGATATAGTTCAGAATCCTCTTATGAGTGTTTCTTTCAATGTTTTTAACTCTTCAAATTATGACACTTTTTTAGCACCGCCAAAATTTGGTTTCTCAGTTAGTCCCTTTTCTACTGAATCCTCAACCAAAAGCCTTCAAGTCTCCCCGAATGCCCCGGTATTAGTAGGATTGGATGAGGCATTGAGTGATGATGACGATAATGAGAATGACAATGACGACAACGACGATGATAAGAATAGTACTCAGTTACATTTAAGGGATGAAGGTTTTGTCCAAGATGTTAAGACCATTTTGGATATAATTCACAAACCGGGTTCTGGACCTTATGAAATTAAGCACAAGCTTGAGGGTTGCTGTGTTAAGGTATCATCAGAGTTGGTTGTGGATGTTCTTTCGAGAATTCGCAATGATTGGGAAGCAGCTTTCACTTTTTTCTTGTGGGCAGGGAAGCAACCTGGGTATGCTCATTCGGTTCGTGAATATCATTCAATGATATCCGTCCTTGGTAAAATGAGGAGGTTTGATACTGCTTGGACTTTAATTGAAGAAATGAGGAGGGGGAGAAATGGTGAATCTATTGTCACCCCACAAACTCTCTTGATTATGATAAGGAAATACTGTGCTGTTCATGATGTTGGAAGGGCTATAAACACTTTCTACGCTTTTAAACGGTTTAACTTTCAAGTTGGATTGTATGAATTTCAAGGGCTTCTTTCTGCGCTTTGCCGGTATAAGAATGTGCAGGATGCTGAGCACTTACTGTTCTGCAACAAAAATGTTTTCCCACTTGATATCAAAAGCTTTAATATCATTCTTAATGGATGGTGCAATTTGATCGTTAGTACGCGCAATGCAGAAAGGGTTTGGGAGGAGATGAGTAAGAGAGGAATCCGACATGATGTTGTCTCATACGCAAGTATCATATCTTGCTATTCAAAGTCTTCTAAACTTTATAGGGTTCTCCAGCTGTTTGAACAAATGAAGAAAAGGAATATCACTCCTGATCGGAAGGTTTATAATGCGGTCATTTTTTCGCTTGCGAAGAATAGGCTTGTGAAAGAAGCTGTAAATCTTATTAGAACAATGGAAGACAACAATGTTACTCCAGATGCCATTACTTACAACTCCCTGATCAAGCCGCTTTGCAAAAACCGCAAAATTGATGAAGCTAAAGAAATTTTTGATGAAATGTTGAAGCGACGAATATCCCCGTCTATTCGGACTTTTCATGCTTTCTTCCGAATATTAAGAGTCAAGGAAGAAGTATTTGAGCTTTTGGACAAAATGAAAGAGCAAGGGTGCAACCCAACTATTGAGACTTATATAATGTTGATAAGAAAGTTTTGCCGCTGGCGCCAGCTTGATGAAGTCAATAAGATATGGAATGCAATGGTGGAAGATGGAATCGGCCATGATCGTAGTTCGTATATTGTACTGATTCATGGCCTGTTTCTGAATTATAAGGTGGAGGAAGCGTACAAATATTATATAGAGATGCAAGAGAAAGGTTTCCTACCGGAACCAAAGACCGAAAATATGCTTCAGGCATGGCTTTCTGGAAGACAAGTAACAGAGGGCCAGGTAACAGATTTAGAACACAATCAATTGGAACATGGTAGTCCTAGAAAGAATGTCAAACCTATACCTAGTAAATTTGATAAGGAAAAAGATTTTCTTCGCGAACCCGAGACGAGAAGCGTAACAAGAGAAGGGGGCTTTTCTTTCTGGGAGAAGTAA 1821 0.3899 MIRIRSKLSVFTVVLSHIRKNPFTVNHCDIVQNPLMSVSFNVFNSSNYDTFLAPPKFGFSVSPFSTESSTKSLQVSPNAPVLVGLDEALSDDDDNENDNDDNDDDKNSTQLHLRDEGFVQDVKTILDIIHKPGSGPYEIKHKLEGCCVKVSSELVVDVLSRIRNDWEAAFTFFLWAGKQPGYAHSVREYHSMISVLGKMRRFDTAWTLIEEMRRGRNGESIVTPQTLLIMIRKYCAVHDVGRAINTFYAFKRFNFQVGLYEFQGLLSALCRYKNVQDAEHLLFCNKNVFPLDIKSFNIILNGWCNLIVSTRNAERVWEEMSKRGIRHDVVSYASIISCYSKSSKLYRVLQLFEQMKKRNITPDRKVYNAVIFSLAKNRLVKEAVNLIRTMEDNNVTPDAITYNSLIKPLCKNRKIDEAKEIFDEMLKRRISPSIRTFHAFFRILRVKEEVFELLDKMKEQGCNPTIETYIMLIRKFCRWRQLDEVNKIWNAMVEDGIGHDRSSYIVLIHGLFLNYKVEEAYKYYIEMQEKGFLPEPKTENMLQAWLSGRQVTEGQVTDLEHNQLEHGSPRKNVKPIPSKFDKEKDFLREPETRSVTREGGFSFWEK* 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1124 606 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 363 397 IPR002885 -
Tpr6g1124 606 Pfam Pentatricopeptide repeat domain 447 474 IPR002885 -
Tpr6g1124 606 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 88 596 - -
Tpr6g1124 606 Gene3D Tetratricopeptide repeat domain 130 284 IPR011990 GO:0005515
Tpr6g1124 606 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 465 499 IPR002885 -
Tpr6g1124 606 Pfam PPR repeat 189 214 IPR002885 -
Tpr6g1124 606 Pfam PPR repeat 330 360 IPR002885 -
Tpr6g1124 606 Pfam PPR repeat 503 532 IPR002885 -
Tpr6g1124 606 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 292 327 IPR002885 -
Tpr6g1124 606 PANTHER OS01G0816000 PROTEIN 88 596 - -
Tpr6g1124 606 MobiDBLite consensus disorder prediction 88 103 - -
Tpr6g1124 606 Pfam PPR repeat family 362 411 IPR002885 -
Tpr6g1124 606 MobiDBLite consensus disorder prediction 88 111 - -
Tpr6g1124 606 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 500 534 IPR002885 -
Tpr6g1124 606 MobiDBLite consensus disorder prediction 563 582 - -
Tpr6g1124 606 Gene3D Tetratricopeptide repeat domain 289 448 IPR011990 GO:0005515
Tpr6g1124 606 Gene3D Tetratricopeptide repeat domain 449 578 IPR011990 GO:0005515
Tpr6g1124 606 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 328 362 IPR002885 -
Tpr6g1124 606 TIGRFAM PPR: pentatricopeptide repeat domain 366 399 IPR002885 -
Tpr6g1124 606 TIGRFAM PPR: pentatricopeptide repeat domain 400 433 IPR002885 -
Tpr6g1124 606 TIGRFAM PPR: pentatricopeptide repeat domain 503 534 IPR002885 -
Tpr6g1124 606 TIGRFAM PPR: pentatricopeptide repeat domain 189 214 IPR002885 -
Tpr6g1124 606 TIGRFAM PPR: pentatricopeptide repeat domain 330 363 IPR002885 -
Tpr6g1124 606 TIGRFAM PPR: pentatricopeptide repeat domain 468 497 IPR002885 -
Tpr6g1124 606 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 398 432 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1124 Tpr-Chr6 11241170 11244048 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1124 145 542 Glycosyltransferase AT1G05670 25.455 1.71e-35 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1124 - - gmx:100785546 896.73