Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1101 ATGGGCGCAACCAGTGACCCAACCCAAGACACTTCCGACGAACAACAAAAACGCTCCGAGATCTACACCTACGAAGCACCATGGCACATCTACGCCATGAACTGGAGTGTCCGTCGTGACAAAAAATACCGATTAGCCATCGCTTCTCTCTTAGAACAATACCCTAACCGCGTCGAAATCGTTCAACTTGATGACACAAACGGTGAAATCAAATCCGATCCAAATCTCTCTTTCGAACATCCATATCCACCTACCAAAGCAATCTTCATCCCTGATAAAGATTGCCACCGTCCTGACCTCTTAGCTACCTCCAGTGATTTTCTCCGTATTTGGCGGATCTCCGATTCCGATGAGTCTCAATCTCGAGGCGGCGTCGAACTCAAGAGTCTTCTTAATGGTAACAAAAACAGTGAGTATTGCGGTCCGATTACTTCATTTGATTGGAATGAAGCTGAACCTCGAAGAATCGGAACTTCGAGTATTGATACTACTTGTACTATTTGGGATATTGAGAAAGAAACTGTTGATACTCAGTTAATTGCGCATGATAAAGAAGTTTATGATATAGCTTGGGGTGGTGTTGGTGTTTTTGCTTCTGTTTCTGCTGATGGATCTGTTAGGGTTTTCGATTTACGCGATAAGGAACATTCTACGATAATTTACGAAAGTTCTGAAGCTGATACACCGTTAGTTAGGCTTGGTTGGAATAAACAAGATCCTCGTTATATGGCTACGATTATTATGGATACTGCCAAGGTTGTTGTTCTTGATATTCGTTTTCCGACATTACCTGTTGTGGAATTGCAGAGACATCAAGCTAGTGTTAATGCTATTGCTTGGGCACCACATAGTTCTTGTCATATTTGTACTGCTGGTGATGATTCTCAAGCTTTGATTTGGGATCTTTCATCAATGGGTCAACCTGTTGAAGGTGGTCTTGATCCTATTTTGGCTTATACTGCTGGTGCTGAAATTGAACAACTTCAATGGTCTTCTTCTCAGCCTGATTGGGTTGCTATTGCTTTTTCAACTAAGCTTCAGATTCTCAGGGTGTGA 1056 0.4233 MGATSDPTQDTSDEQQKRSEIYTYEAPWHIYAMNWSVRRDKKYRLAIASLLEQYPNRVEIVQLDDTNGEIKSDPNLSFEHPYPPTKAIFIPDKDCHRPDLLATSSDFLRIWRISDSDESQSRGGVELKSLLNGNKNSEYCGPITSFDWNEAEPRRIGTSSIDTTCTIWDIEKETVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEADTPLVRLGWNKQDPRYMATIIMDTAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1101 351 ProSiteProfiles Trp-Asp (WD) repeats profile. 268 304 IPR001680 GO:0005515
Tpr6g1101 351 Pfam WD domain, G-beta repeat 179 210 IPR001680 GO:0005515
Tpr6g1101 351 Pfam WD domain, G-beta repeat 268 301 IPR001680 GO:0005515
Tpr6g1101 351 Gene3D - 9 350 IPR015943 GO:0005515
Tpr6g1101 351 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 268 304 - -
Tpr6g1101 351 PANTHER WD REPEAT CONTAINING PROTEIN 12 351 IPR045159 -
Tpr6g1101 351 SUPERFAMILY WD40 repeat-like 54 309 IPR036322 GO:0005515
Tpr6g1101 351 SMART WD40_4 71 112 IPR001680 GO:0005515
Tpr6g1101 351 SMART WD40_4 172 210 IPR001680 GO:0005515
Tpr6g1101 351 SMART WD40_4 261 301 IPR001680 GO:0005515
Tpr6g1101 351 SMART WD40_4 124 169 IPR001680 GO:0005515
Tpr6g1101 351 ProSitePatterns Trp-Asp (WD) repeats signature. 288 302 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1101 Tpr-Chr6 10536515 10537954 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1101 K11805 - gmx:100818850 680.248