Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1098 ATGGCTTCTTCATTTTGGACCCTTTGTTTGATTATTTTAGCATCACTAATCTCTTCTTCATTCTGTGCTCCTCCAAGGAAGCCAGTGGATGTACCATTTGGTAGAAACTATTACCCTACTTGGGCTTTTGATCATATCAAATACTTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAGTACACTGGTACTGGTTTTCAATCCAAAGGTTCATACTTGTTTGGTCATTTTAGTATGAACATTAAGATGGTTCCTGGTGATTCAGCTGGAACAGTTACTGCTTTCTATCTATCTTCACAAAATGCTGAACATGATGAAATAGATTTTGAGTTCTTGGGGAACAGAACAGGACAACCTTACATTTTGCAAACAAATGTGTTCACTGGTGGTCAAGGTAACAAAGAACAAAGGATCTTTCTTTGGTTTGATCCTACAAAAGAGTTTCATAGATACTCCATTCTATGGAACATGTACCAGATTGTGTTTTTTGTGGATGATGTACCAATTAGAGTGTTCAAGAACAGCAAAGATTTAGGAGTAAGATTTCCATTTGACCAACCAATGAAAATCTACAACAGTTTATGGAATGCAGATGATTGGGCAACAAGAGGTGGATTAGAGAAAACAGATTGGTCAAAAGCACCATTCATAGCAGGATACAAAAGTTTCCACATAGATGGTTGTGAAGCTTCTGTTCAAGCAAAATTCTGTGCTACACAAGGTAAAAGATGGTGGGATCAACCTGAATTTCGTGATCTTGATGCTGCTCAATGGCGTAGACTAAGATGGGTTCGTGAAAAATTCACCATTTACAATTATTGCACTGATAGAAAACGTTTGCCTCAAATTCCTCCTGAATGCAAAAGAGACCGTGACATTTAA 885 0.3751 MASSFWTLCLIILASLISSSFCAPPRKPVDVPFGRNYYPTWAFDHIKYFNGGSEIQLHLDKYTGTGFQSKGSYLFGHFSMNIKMVPGDSAGTVTAFYLSSQNAEHDEIDFEFLGNRTGQPYILQTNVFTGGQGNKEQRIFLWFDPTKEFHRYSILWNMYQIVFFVDDVPIRVFKNSKDLGVRFPFDQPMKIYNSLWNADDWATRGGLEKTDWSKAPFIAGYKSFHIDGCEASVQAKFCATQGKRWWDQPEFRDLDAAQWRRLRWVREKFTIYNYCTDRKRLPQIPPECKRDRDI* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1098 294 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 2 292 - -
Tpr6g1098 294 ProSitePatterns Glycosyl hydrolases family 16 active sites. 107 117 IPR008263 GO:0004553|GO:0005975
Tpr6g1098 294 Pfam Glycosyl hydrolases family 16 34 214 IPR000757 GO:0004553|GO:0005975
Tpr6g1098 294 Gene3D - 19 294 - -
Tpr6g1098 294 SUPERFAMILY Concanavalin A-like lectins/glucanases 30 292 IPR013320 -
Tpr6g1098 294 CDD GH16_XET 28 288 IPR016455 GO:0010411|GO:0016762|GO:0042546
Tpr6g1098 294 PIRSF EndGlu_transf 1 293 IPR016455 GO:0010411|GO:0016762|GO:0042546
Tpr6g1098 294 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 24 221 IPR000757 GO:0004553|GO:0005975
Tpr6g1098 294 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 2 292 IPR044791 GO:0004553
Tpr6g1098 294 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 241 288 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1098 Tpr-Chr6 10499286 10501378 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1098 7 294 Glycoside Hydrolase AT5G13870 80.208 0.0 504
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1098 K08235 - gmx:547775 557.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g1098 6 10499286 10501378 Tpr6g1098 6 10499286 10501378 ECH