Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1089 ATGTCGTTAGAAGACGAATGCTTACATCACGACAGTGACATTGACGACATCAACGACGACGGCGCTTCATTCGGCGTCGTTTCACTGGACGACGAAGGTTTCCCTTCACAAGTTCCAGTCGAAGACGCTTCACCAAACGAATCAGAGAAAAGCAGTTTCGCCACCGATTTCTATCGCTGCGGTTCCGATTACTCGTCGCTGTTATCACCAGAAAACAACGGAAACAACGATTCCCTGCGCGATTTGTTATCCTCAGGGAAGAAACTGAAGCAGGCCAATTTGTTCCAGATTTGGGGATTCAAAAGAAATGTTGCAGTTGGTTCTGTTGAATCTGAATCCAATCAACGTGGTTATTGTGATGACGTAGGTGAGGGAAGTGTTTCGTCGGAGAAGAAGATTTTTAAACGTGGAAATTGGGGTTCAATTTTGCGTGATAAGGGGAAAGTTGTTGAGAATCCAAAATCTTCTAGCAAGAGAAAGAGTTTTCATGGAGAGAATAGGGTTACTACTCGTTCATGTCCCTTTTATAAGAAAATGCCAGGAACAAACTTCACAGTTGATGCTTTTCGTTATGGATGTGTTGATGGGTGTTCAGCGTACTTTCTTAGTCATTTCCATGCCGATCATTATGGTGGTCTTAGCAAGAAATGGTCACATGGCCCTATTTATTGCTCGCCTCTTACCGGATGGCTAGTTCAAATGTGTCTCTATGTAAATCCTTCGTACATCTGCCCTTTGGAATTTGACACTGAATATGTGATTGACGGTATCAAAGTGACTTTTATAGATGCTAACCATTGCCCTGGTGCTGCTTTGATTCACTTTGAGCTCCCAAATGGACAATGTTATTTGCACACTGGGGACTTTAGAGCTTGTAAACTAATGCAAGACTACCATCTTATTGTAAATAAACGTGTGAATGTATTGTATTTGGATACTACATATTGCAACCCAAAGTACAAGTTTCCTTCCAAGGAAGATGTTCTCAACTATGTTGCTAAAATTACTAAGAACCACCTCAAAATGCATCCCAAAACTTTAGTGGTTGTTGGGGCATACAGTATTGGCAAAGAATGTGTATATCTTGCTATTTCTAAGGCACTTGGGGTAAAAATCTATGCAAATGCTTCAAGAAGAAGGATATTGCTCGCTTATGATTGCCCTGACTATTCAGATAGACTCTGTACAAATGGAAATAACACGCTTCTCCATGTTCTGCCCATGTCATCTCTGAGAATTGAGGCTTTGAAGGAATACTTGAAAACCTACAAGGAACAATTCACTTCAGTATTGGCATTTCGTCCAACAGGTTGGACCTTCAGTGAGAAGATAGGCAATGATCTGGAACTAATTAAACCTGTTTCCAGAGGAAATATCACCATATATGGGGTTCCCTACAGTGAGCATTCCAGCTTCACAGAACTACGGGATTTTGTTCAGTTTTTGAGACCAGACAAGATAATCCCTACTGTGAATGTTGGGAGTGCAGCTAGTCGAGAAAAGATGCAATCTTATTTCCGAGACTGGTTGAAGGGCTGA 1539 0.4146 MSLEDECLHHDSDIDDINDDGASFGVVSLDDEGFPSQVPVEDASPNESEKSSFATDFYRCGSDYSSLLSPENNGNNDSLRDLLSSGKKLKQANLFQIWGFKRNVAVGSVESESNQRGYCDDVGEGSVSSEKKIFKRGNWGSILRDKGKVVENPKSSSKRKSFHGENRVTTRSCPFYKKMPGTNFTVDAFRYGCVDGCSAYFLSHFHADHYGGLSKKWSHGPIYCSPLTGWLVQMCLYVNPSYICPLEFDTEYVIDGIKVTFIDANHCPGAALIHFELPNGQCYLHTGDFRACKLMQDYHLIVNKRVNVLYLDTTYCNPKYKFPSKEDVLNYVAKITKNHLKMHPKTLVVVGAYSIGKECVYLAISKALGVKIYANASRRRILLAYDCPDYSDRLCTNGNNTLLHVLPMSSLRIEALKEYLKTYKEQFTSVLAFRPTGWTFSEKIGNDLELIKPVSRGNITIYGVPYSEHSSFTELRDFVQFLRPDKIIPTVNVGSAASREKMQSYFRDWLKG* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1089 512 CDD SNM1A-1C-like_MBL-fold 171 318 - -
Tpr6g1089 512 Pfam DNA repair metallo-beta-lactamase 391 494 IPR011084 -
Tpr6g1089 512 MobiDBLite consensus disorder prediction 1 52 - -
Tpr6g1089 512 PANTHER DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED 70 511 - -
Tpr6g1089 512 Gene3D - 180 491 IPR036866 -
Tpr6g1089 512 MobiDBLite consensus disorder prediction 1 17 - -
Tpr6g1089 512 Gene3D - 321 469 - -
Tpr6g1089 512 PANTHER DNA CROSS-LINK REPAIR PROTEIN SNM1 70 511 - -
Tpr6g1089 512 SUPERFAMILY Metallo-hydrolase/oxidoreductase 195 503 IPR036866 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1089 Tpr-Chr6 10408056 10411629 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1089 K15340 - gmx:100790844 779.245