Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1086 ATGGCTTCTCTTCTCAAACCTCCACAACCCATTTCCTCACCCCCCTCCATTACCAAACTCACCTCTTACCCAAAAACATTCAACTTCTTCATTTTCAACTTCAACTACCCTTTTCACCATAAAACCATCAAAAAGCACTTTGTTCTAGCAAGACCCTTTTTCCCTCTCAATGCAGCCTACACACAAGGACTCTATGTCCCTTCTCCACCCTCCAAAACTAACAAAATTGAGCTTGAAAATGACCCTATCTCAGTCCTCAACAAGAGAATTCGTCGCGAATACGGTAAAAAAGAGGTTACAAGGACTGTTATGGACTCTGAGGAAGCTGATAAGTACATACAAATGGTGAAGGAACAACAGCAGAGGGGGCTTCAAAAGCTTAAAGGTGATAGAGAGAGTAAAGATGGTACCATTAGTTATAAGGTAGACCCTTCTACACTTCGTTCTGGTGACTATGTTGTGCATAGGAAAGTTGGTATTGGAAGGTTTGTTGGGATTAAATTCGATGTTTCGAAGAATACAAATGAACCTACTGAGTATGTTTTCATTGAGTATGCTGATGGATTGGCAAAGCTTCCTGTTAAACAGGCTTCTAAACTGCTTTATAGATATAGTCTTCCAAATGAAAAACAAAAGCCTAGGTCATTGAACAAGTTGCATGATACTAGTGCTTGGGAGAAAAAAAAGATTAAAGGAAAGGTTGCAATACAGAAGATGGTTGTTGACTTGATGGAACTCTATCTGCATAGGCTTAAACAAAGAAGGCCTCCCTATCCTAGGAGTCCTGCCGTGGCTGAATTTGCAGCGCAATTTAATTATGAACCTACGCCGGATCAGAAACAGGCTTTTATTGATGTTGAGAAGGATCTGACAGAACGAGAAACTCCAATGGACAGATTAATTTGTGGAGATGTTGGTTTTGGTAAAACTGAGGTTGCGCTGCGTGCTATCCAATGTGTTGTCGCAGCTAAAAAGCAAGCGATGGTTCTCGCACCGACAATAGTTCTAGCAAAACAACATTTTGTTGTTATTTCAGAGCGCTTTTCTGTATATCCTGATATTAAAGTTGGACTGCTTAGCAGATTTCAGAACAGATCAGAAAAAGAACTGGCCTTGGAAATGATTAAGAATGGTGATCTAGATATTATAGTTGGGACTCATTCACTCCTAGGAAACCGTGTTGTTTATAACAATCTTGGCCTGCTTGTGGTCGATGAGGAACAGAGGTTTGGTGTCAAACAGAAGGAGAGGATTGCTTCTTTTAAAACTTCCGTGGATGTACTTACTTTATCTGCAACCCCTATACCACGGACTCTTTATTTAGCTTTGACAGGATTTCGCGATGCTAGTTTAATTTCAACTCCACCGCCAGAAAGAGTTCCTATCAAGACTGAGCTTTCATCATTCAGTAAGGAGAAAGTAATATCAGCCATCAAGTATGAGCTGGACCGTGGTGGTCAAGTTTTTTATGTTATGCCATATATTAAAGGACTTGAAGAAGCGACGGAATTTCTTGAAGAGGCATTCCCCGATGTGGAAATAGCCGTTGCCCATGGGAAGCAATTCTCAAAGCAATTAGAGGATTCCATGGAGAAGTTTGCTCAAGGTGAAATAAAAATCCTTATCAGTACAAATATAGTTGAAAGTGGGCTTGATATTCAAAATGCAAACACCATCATCATTCAGGATGTTCAACAATTTGGCCTTGCACAGTTGTACCAGTTGCGTGGAAGAGTTGGGCGGGCAGAGAAGGAAGCTTATGCATACTTATTTTATCCTGATAAGAGTATGCTCTCTGATCAAGCCGCGGAGAGGCTTGCAGCTCTTGAAGAATGCCGTGAACTTGGTCAAGGCTTCCAACTAGCTGAGAGAGATATGGGTATAAGAGGTTTTGGTACTATTTTTGGCGAGCAGCAAACTGGAGATGTTGGAAATGTTGGCATTGATCTTTTCTTTGAGATGCTCTTTGAGAGCTTATCCAAGGTTGAAGATCACCGTGTTGTATCAGTTCCTTATCACTCGGTGCAGGTTGACTTAAATATCAATCCTCACCTTCCTTCAGAATACATAAATCATTTCGAGAACCCTATGGAAATTATTAATGAAGCTGAGCGAAACGCTGAGAAAGACATTTGGAGTCTGATGCAATTTACAGAGGATTTTCGCCGCCAATATGGCAAAGAACCTCACCCGATGGAGATTATCTTAAAGAATCTTTACTTGAGGAGAATGGCAGCTGATATAGGGGTAACTAGAATTTACTCTGAAGGGAAGATAGTGTTTATGAAAACAAAGATGAGTAAAAAGGTTTTCAAAATTATGATAGAGTCAATGACATCGGATATATATAAAGATTCAATGGTTCTTGAGGGGGATCAAATTAAGGTTGAACTTCTATTAGAGCTGCCAAAAGAACAACTTCTTAATTGGATCTTTAATTGCATGGCTGAACTTCATGCTTCGCTAGCATCCCTCATAAAGTGCATGACATCAGAACAAATTGAGACAATTAGTTGA 2517 0.4013 MASLLKPPQPISSPPSITKLTSYPKTFNFFIFNFNYPFHHKTIKKHFVLARPFFPLNAAYTQGLYVPSPPSKTNKIELENDPISVLNKRIRREYGKKEVTRTVMDSEEADKYIQMVKEQQQRGLQKLKGDRESKDGTISYKVDPSTLRSGDYVVHRKVGIGRFVGIKFDVSKNTNEPTEYVFIEYADGLAKLPVKQASKLLYRYSLPNEKQKPRSLNKLHDTSAWEKKKIKGKVAIQKMVVDLMELYLHRLKQRRPPYPRSPAVAEFAAQFNYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAIQCVVAAKKQAMVLAPTIVLAKQHFVVISERFSVYPDIKVGLLSRFQNRSEKELALEMIKNGDLDIIVGTHSLLGNRVVYNNLGLLVVDEEQRFGVKQKERIASFKTSVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERVPIKTELSSFSKEKVISAIKYELDRGGQVFYVMPYIKGLEEATEFLEEAFPDVEIAVAHGKQFSKQLEDSMEKFAQGEIKILISTNIVESGLDIQNANTIIIQDVQQFGLAQLYQLRGRVGRAEKEAYAYLFYPDKSMLSDQAAERLAALEECRELGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEDHRVVSVPYHSVQVDLNINPHLPSEYINHFENPMEIINEAERNAEKDIWSLMQFTEDFRRQYGKEPHPMEIILKNLYLRRMAADIGVTRIYSEGKIVFMKTKMSKKVFKIMIESMTSDIYKDSMVLEGDQIKVELLLELPKEQLLNWIFNCMAELHASLASLIKCMTSEQIETIS* 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1086 838 SUPERFAMILY CarD-like 142 210 IPR036101 -
Tpr6g1086 838 SMART helicmild6 499 583 IPR001650 -
Tpr6g1086 838 Pfam DEAD/DEAH box helicase 297 435 IPR011545 GO:0003676|GO:0005524
Tpr6g1086 838 PANTHER TRANSCRIPTION-REPAIR-COUPLING FACTOR 48 798 - -
Tpr6g1086 838 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 290 452 IPR014001 -
Tpr6g1086 838 CDD DEXHc_TRCF 261 454 - -
Tpr6g1086 838 Pfam Helicase conserved C-terminal domain 476 582 IPR001650 -
Tpr6g1086 838 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 324 596 IPR027417 -
Tpr6g1086 838 SUPERFAMILY TRCF domain-like 671 818 IPR037235 -
Tpr6g1086 838 Pfam CarD-like/TRCF domain 147 247 IPR003711 -
Tpr6g1086 838 SMART CarD_TRCF_2 146 248 IPR003711 -
Tpr6g1086 838 Gene3D - 150 210 - -
Tpr6g1086 838 SMART ultradead3 271 463 IPR014001 -
Tpr6g1086 838 Gene3D - 211 454 IPR027417 -
Tpr6g1086 838 Gene3D - 674 822 IPR037235 -
Tpr6g1086 838 Gene3D - 146 661 IPR027417 -
Tpr6g1086 838 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 461 627 IPR001650 -
Tpr6g1086 838 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 48 798 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1086 Tpr-Chr6 10358268 10370463 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1086 - - gmx:100791900 1285.4