Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0959 ATGGATTATCACGGCGGTCCTATTTCCGAACCCAACACCCCAACCACCCCAAGACCCACCCTATTCCTCTCCACTTCCGGAAAAGCCCTTCTCGTCTCTAACTCCAACAAATCCCTCATTTCTAATTCAGGCAAACGTCTCGATAACACCAATAGTAAGAAAAAATATGTCAAACAGGTTACCGGCAGACATAATGATACCGAACTTCATCTCGCTGCGCAACGCGGCGATGCTAGTGCGGTTAGGCAGATTTTGGCTGAAATTGATGATCAAATGATGGGAACGTTAAGTGGTGCTGAGTTTGATGCTGAGGTTGCTGAAATTAGGTCTGCTATTGTTAATGAGGTTAATGAGTTGGGTGAAACTGCTTTGTTTACAGCTGCTGATAAAGGACAGTTTGATGTTGTTAAAGAGCTTCTTCCTTATACAACCAAAGAAGCACTTTCTTTTAAAAACCGTTCTGGTTTTGATCCTTTGCATATTGCAGCAAACCAAGGTCACAAAGATATTGTGCAGTTCTTGCTAGACCATGATCCGGAGCTAATTAAGACATTTGCACAGTCAAATGCAACTCCTCTTGTATCTGCAGCTACAAGAGGGCATGCGGATGTTGTTGAACTCTTACTATCATATGATCCTAGTCAGTTGGAGATAGCTAGATCCAATGGAAAGAATGCACTCCATTTAGCTGCACGTCAAGGTTATGTTGATGTTGTCAAGATTTTGTTAGGGAAGGATCCGCAACTTGCTCGAAGGACTGATAAGAAAGGACAAACTTCGCTTCATATGGCTGTCAAAGGGGTTAACTGTGAAGTGGTGAAGTTGCTTCTTGCTGCTGATGCTGCAAGTGTCATGCTTCCTGATAAGTTTGGAAACACTGCTTTGCATGTAGCCACCAGGAAGAAGAGGGTAGAGATAGTGAACGAGTTATTGCTTCAACGTGACACCAATGTGAATGCCCTCACAAGAGACCGCAAAACAGCTCTTGACCTTGCGGAAGCACTTCCAATATCGGAAGAAATTTTGGAGATTAAGGACTCCCTGATTCGTTATGGTGCAGTTAAAGCCAATGATCTCAACCAGCCAAGGGACGAGTTAAGGAAAACCATGACACAGATTAAGAAAGATGTGTCTTTTCAGCTTGAACAAACTCGAAAAACAAACAAGAATGTGAATGGGATTGCCAAGGAGCTACGCAAGTTGCATAGAGCAGGAATCAACAATGCTACCAACTCTGTAACTGTGGTTTCAGTACTATTTGCAACTGTGGCATTTGCAGCGCTTTTCACGGTCCCTGGTGGGGATGATAATCAAGGGAAGGCTGTGATGGTGCACAAAACATCTTTCAAGACCTTCTTTATTGCTAATGCTATTGCGCTTTTCACTTCTTTGGCTGTGGTGGTAGTTCAAATAACAGTTGTCAGAGGGGAGATAAAGTCCGAGAGGAGGGTTGTGGAGGTGATCAATAAGATGATGTGGTTAGCCTCTGTCTGTACTTCAATTTCATTCATTGCAGCATCTTATATAGTAGTTGGTCGGCGCAGCCAGTGGGCTGCAATCCTTGTTACTGTTGTTGGGGCGATTATAATGGGTGGTGTTCTTAGTGCAATGACATACTATGTTGTCAAATCAAAACGTCACCGAAGAGAGAGGAAAAAAGAGAAGCTATCAAGGAATGGAACATATTCAATGCGTAATTCTGATTCTGAATCAGAAGTAAATCCAATTTATGCTATTTAA 1740 0.4276 MDYHGGPISEPNTPTTPRPTLFLSTSGKALLVSNSNKSLISNSGKRLDNTNSKKKYVKQVTGRHNDTELHLAAQRGDASAVRQILAEIDDQMMGTLSGAEFDAEVAEIRSAIVNEVNELGETALFTAADKGQFDVVKELLPYTTKEALSFKNRSGFDPLHIAANQGHKDIVQFLLDHDPELIKTFAQSNATPLVSAATRGHADVVELLLSYDPSQLEIARSNGKNALHLAARQGYVDVVKILLGKDPQLARRTDKKGQTSLHMAVKGVNCEVVKLLLAADAASVMLPDKFGNTALHVATRKKRVEIVNELLLQRDTNVNALTRDRKTALDLAEALPISEEILEIKDSLIRYGAVKANDLNQPRDELRKTMTQIKKDVSFQLEQTRKTNKNVNGIAKELRKLHRAGINNATNSVTVVSVLFATVAFAALFTVPGGDDNQGKAVMVHKTSFKTFFIANAIALFTSLAVVVVQITVVRGEIKSERRVVEVINKMMWLASVCTSISFIAASYIVVGRRSQWAAILVTVVGAIIMGGVLSAMTYYVVKSKRHRRERKKEKLSRNGTYSMRNSDSESEVNPIYAI* 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0959 579 ProSiteProfiles Ankyrin repeat profile. 290 323 IPR002110 GO:0005515
Tpr6g0959 579 ProSiteProfiles Ankyrin repeat region circular profile. 222 243 - -
Tpr6g0959 579 ProSiteProfiles Ankyrin repeat profile. 222 254 IPR002110 GO:0005515
Tpr6g0959 579 PANTHER CASKIN 31 572 - -
Tpr6g0959 579 SUPERFAMILY Ankyrin repeat 69 349 IPR036770 -
Tpr6g0959 579 ProSiteProfiles Ankyrin repeat region circular profile. 256 281 - -
Tpr6g0959 579 SMART ANK_2a 119 147 IPR002110 GO:0005515
Tpr6g0959 579 SMART ANK_2a 290 320 IPR002110 GO:0005515
Tpr6g0959 579 SMART ANK_2a 256 286 IPR002110 GO:0005515
Tpr6g0959 579 SMART ANK_2a 222 251 IPR002110 GO:0005515
Tpr6g0959 579 SMART ANK_2a 64 93 IPR002110 GO:0005515
Tpr6g0959 579 SMART ANK_2a 154 183 IPR002110 GO:0005515
Tpr6g0959 579 SMART ANK_2a 188 217 IPR002110 GO:0005515
Tpr6g0959 579 Pfam Domain of unknown function 406 510 IPR026961 -
Tpr6g0959 579 ProSiteProfiles Ankyrin repeat region circular profile. 154 181 - -
Tpr6g0959 579 Gene3D - 179 379 IPR036770 -
Tpr6g0959 579 PANTHER ANKYRIN REPEAT-CONTAINING PROTEIN ITN1 31 572 - -
Tpr6g0959 579 ProSiteProfiles Ankyrin repeat region circular profile. 290 320 - -
Tpr6g0959 579 Gene3D - 37 178 IPR036770 -
Tpr6g0959 579 Pfam Ankyrin repeats (3 copies) 69 178 IPR002110 GO:0005515
Tpr6g0959 579 Pfam Ankyrin repeats (3 copies) 254 319 IPR002110 GO:0005515
Tpr6g0959 579 Pfam Ankyrin repeats (3 copies) 188 246 IPR002110 GO:0005515
Tpr6g0959 579 ProSiteProfiles Ankyrin repeat profile. 154 181 IPR002110 GO:0005515
Tpr6g0959 579 ProSiteProfiles Ankyrin repeat profile. 256 281 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0959 Tpr-Chr6 8426049 8429381 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0959 6 579 Miscellaneous Gene Families AT3G09550 73.096 0.0 840
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0959 - - gmx:100801840 854.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0959 6 8426049 8429381 Tpr6g0959 6 8426049 8429381 ECH