Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0915 ATGATGAATACGGCGAACGGTAATATGACGACGCCGTCTTCTTCTTCATCCGGTGGTGGTGGTGGTACTACACAGTCACAAGGTCTCAAAACCTATTTCAAAACCCCTGAAGGAAAATATAAACTTCAATTCGAGAAAACTCATCCTGCTGGTCTTCTTCAATTCAATCATGGCAAAACCGTTTCTCTGGTAACCCTAGCACATCTTAAGGAGAAGGCAGCGCCTTCAACTCCGACTGCGTCATCTTCGAGTTTTAGTGCCAGCAGTGGAGTACGGTCAGCTGCGGCTAGATTGTTAGGAGGAGGAAGCAATGGAAGTAGGGCGCTTAGTTTTGTCGGTGGAAATGGTAGTAGTAAAAGCAATGGAGGAACTGGTAGGATTGGTTCGATTGGTGCTTCGAGTTTGAGTAGTTCGGTTGCTAATCCTAATTTTGATGGGAAAGGATCTTACTTGATTTTCAATGCTGGGGATGCGATTTTGATAAGTGATTTGAATTCTCAAGATAAGGACCCGATAAAGTCTATCCACTTCAGTAATTCGAATCCTGTCTGCCACGCATTTGATCAGGATGCTAAGGACGGGCATGATCTGCTCATAGGCTTGTTCTCTGGCGATGTCTATTCGGTGTCACTGAGACAGCAATTACAGGATGTTGGTAAAAAGATTGTCGGGGCGCACCATTACAACAAAGATGGTATTCTCAATAACAGTCGTTGTACATGTATTTCTTGGGTGCCTGGAGGTGATGGTGCTTTTGTTGTTGCGCATGCTGATGGGAATTTGTACGTATATGAAAAGAATAAAGATGGTGCTGGTGATTCTTCATTCCCAATCCTCAAAGATCAAACTCAGTTTTCTGTTTCCCATGCACGGTACAGTAAGAGTAATCCAATAGCCAGATGGCATATATGCCAGGGTTCGATTAACAGTATTTCTTTCTCATCGGATGGGACATACATGGCAACTGTGGGACGAGATGGTTACTTGCGAGTGTTTGATTATGCAAAAGAACAACTTATATGCGGTGGGAAAAGTTATTATGGTGGTTTATTATGTTGTGCTTGGAGCATGGATGGAAAGTATGTTTTGACGGGAGGAGAAGATGATTTAGTTCAAGTTTGGAGCATGGAAGATCGCAAAGTTGTTGCATGGGGCGAGGGACATAACTCATGGGTCAGTGGAGTGGCTTTTGATTCATATTGGTCATCACCAAATTCAAATGACAATGGAGAGACAGTTATGTATCGATTCGGTTCAGTTGGTCAGGATACACAATTGCTTCTATGGGATCTGGAAATGGACGAAATTGTAGTGCCCTTGAGGCGTCCCCCCGGTGGATCCCCAACTTTTGGTTCCCCAACTTTTAGTACTGGAAGTCAGTCATCCCATTGGGACAATGTAGTCCCATTGGGTACCTTGCAACCTGCTCCAAGTATGCGGGATGTTCCAAAAATCTCTCCACTGGTTGCTCATCGTGCGCATACTGAGCCACTTTCTAGCGTGATATTTACCCAGGAATCTGTACTTACAGCCTGCCGGGAGGGGCACATCAAAATCTGGACGAGACCTGGCATAGCCGAGAGCCAGCCAAGCAACTCGGAAACCTTGTTAGCTACCAGTCTCAAGGAGAAGCCTCCACTTTCTAGCAAGATCAGCAACTCTAGCTACAAACAATAA 1677 0.4484 MMNTANGNMTTPSSSSSGGGGGTTQSQGLKTYFKTPEGKYKLQFEKTHPAGLLQFNHGKTVSLVTLAHLKEKAAPSTPTASSSSFSASSGVRSAAARLLGGGSNGSRALSFVGGNGSSKSNGGTGRIGSIGASSLSSSVANPNFDGKGSYLIFNAGDAILISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLFSGDVYSVSLRQQLQDVGKKIVGAHHYNKDGILNNSRCTCISWVPGGDGAFVVAHADGNLYVYEKNKDGAGDSSFPILKDQTQFSVSHARYSKSNPIARWHICQGSINSISFSSDGTYMATVGRDGYLRVFDYAKEQLICGGKSYYGGLLCCAWSMDGKYVLTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSSPNSNDNGETVMYRFGSVGQDTQLLLWDLEMDEIVVPLRRPPGGSPTFGSPTFSTGSQSSHWDNVVPLGTLQPAPSMRDVPKISPLVAHRAHTEPLSSVIFTQESVLTACREGHIKIWTRPGIAESQPSNSETLLATSLKEKPPLSSKISNSSYKQ* 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0915 558 SUPERFAMILY WD40 repeat-like 157 521 IPR036322 GO:0005515
Tpr6g0915 558 ProSiteProfiles Trp-Asp (WD) repeats profile. 343 384 IPR001680 GO:0005515
Tpr6g0915 558 MobiDBLite consensus disorder prediction 526 558 - -
Tpr6g0915 558 Gene3D - 20 528 IPR015943 GO:0005515
Tpr6g0915 558 PANTHER LOW QUALITY PROTEIN: WD REPEAT-CONTAINING PROTEIN 20-LIKE 2 555 - -
Tpr6g0915 558 Pfam WD domain, G-beta repeat 305 333 IPR001680 GO:0005515
Tpr6g0915 558 Pfam WD domain, G-beta repeat 350 375 IPR001680 GO:0005515
Tpr6g0915 558 PANTHER WD REPEAT PROTEIN 2 555 - -
Tpr6g0915 558 SMART WD40_4 336 375 IPR001680 GO:0005515
Tpr6g0915 558 SMART WD40_4 227 265 IPR001680 GO:0005515
Tpr6g0915 558 SMART WD40_4 484 521 IPR001680 GO:0005515
Tpr6g0915 558 SMART WD40_4 378 430 IPR001680 GO:0005515
Tpr6g0915 558 SMART WD40_4 294 333 IPR001680 GO:0005515
Tpr6g0915 558 MobiDBLite consensus disorder prediction 1 29 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0915 310 437 Miscellaneous Gene Families AT5G08390 22.656 1.92e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0915 K24741 - gmx:100782580 931.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0915 6 8079581 8085593 Tpr6g0915 6 8079581 8085593 ECH