LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr6g0908	ATGGAAGCAGAGGCATTGAGTTCTGAACAGGTGAAGAATAAAATGGAGACGAAGAGATTGAGTACTGATAACCCTCCTGGCTTTCTTAGCCGAGCACTTCCGGCTGTTATACCCGTGCTTTTGATTTCGATAGGATATGTTGACCCTGGAAAGTGGGTGGCTAGTGTTGAGGGTGGTGCAAGGTTTGGTTTTGATCTGGTAGCTTTCACACTTATTTTCAATTTGGCTGCTATCTTCTGCCAGTACTTATCTGCAAGGGTTGCTGTTATCACTGAAAGAGATCTTGCTCAGATTTGCAGTGATGAGTATGATACATGGACATGCCTTCTCCTAGGAATTCAAATGGAACTTTCAGTGATTATGCTAGATCTTAACATGATCTTGGGCATGGCACAAGGATTAAATCTTATTTTTGGGTGGGACTTGTTCACCTGTGTCTTTTTAACCGCCACTGGTGCTGTTTTTCATATACTTCTTGCTGTCCTCCTTGACATTGAAAAGGCGAAATTCCTAGGGCAGTTTGTGGCAGGCTTTGTATTACTTTCTTTTATACTTGGACTACTCATCAACCAATCAGAAATTCCACTTCCCATGAATGGAATACTAATGAAGTTGAGTGGGGAGAGTGCATTTATGCTGATGAGTCTTCTTGGAGCAACTCTTGTGCCTCACAACTTTTACCTTCATTCCTCTATTGTACAGTGGCATAAGGGACCAAAAAACATTTCTAAAGATGCATTGTGTCATAACCATTTTTTGGCCATCTTATGTGTCTTCAGTGGCCTTTATTTGGCAAATAATATGTTGATGACCACCTCAGCAAATGAGTTCTCTAGTACAGGTCCTGTTTTGCTTACTTTTCAGGATGCACTGTCACCAATGGAACAGGTGTTGCGCAGCCCAATAGCTCTGCTTGGTTTTGTACTCATTTTGTTTCTAGCAAATCAAACTACTGCTTTGACTTGGAGTTTAGGCGGAGAAGTAGTAGTTAATGGGTTCTTAAAGTTGGACATTCCAGGCTGGCTTCACTATTCCACAATTAGAGTGATTGCTGTGCTGCCTGCCCTTTATTGCGTCTGGAGTTCAGGAGCTGAAGGGATGTATCAGCTACTCATATTCACTCAGGTGTTAGTAGCTCTGCAACTTCCATCTTCTGTGATTCCCCTTTTTCGAGTAGCTATGTCGAAATCAATAATGGGCGCACACAAGATCTCCCAGCCGGTGGAACTTTTGGCATTGGTCATATTCATCGGGATGCTTGGCTTGAATATCATCTTTTTGGTAGAGATGATATTTGGCAATAGTGATTGGGCAGCTGATTTGAGATGGAATGTGGGGAATGGTGTGTCTGTCTCATATTCCATTCTTCTCATCGCTGGTTTAATATCACTATGCCTGATGCTTTGGTTAGCCGCCACCCCGTTAAGATCTGCCAATATTCAAGTGTTGAATTGGGATATGCCGGAGACTGTATCGAATCCGCTGGTTGATGGTGAAGAATCATATATAACTGAAACAGTGTCTCATGAAGATGCATCTGTTGAAGCCGACGAACCAAAACCAGCTCTGGCAAGGACATTTGAGTACTCAGAACTCGCAAGTTGTCGTCCTGATTTACCTGAAACGATAATGGAACCTGATCTCCAAGCGAATGCTTTAATGTTGAATCATTCTGTTACACCATCAGTTTCCACTTCAGAGTCAGGGGCAGTATCAACTGTGGTTAATGATAATTCTGATTCTAGATCTGAAGACCAAAAACCTATAATGGAAACGAATGCCCCAATTGAGAAGAATGTGGAAATTGAAGATTATTCAAACGCTGAAAGGGATGATGACGATGGAGACTCTTGGGAAACCGAAGAATCAACCAGAGTAGTCTTGGCAAATCCCCCATCGTCAACATCAGAAGGCCCTCCATCATTCAGGAGTATTAGTGGGAAAAGTGATGATGGTGGGGGTAGCTTCGGAAGTCTATCGAGAATAGAAGGATTAGGACGTGCTGCAAGACGTCAGCTAGCGGCTATTCTTGATGAATTCTGGGGACAACTTTATGATTTCCATGGGCAAGCAACCCAGGAAGCTAAGGCTAAGAAAATTGATGTTTTGCTGGGGCAGGGAGTAGATTCAAGACCCACTGGATCCTTGCAGAAAATGGATGCATGTGGTAAGGACTATTCTGAATACTTAGTATCTGAAGGTGGTAGAGCTTCCGACACTTCAATCAACGCCGGTCCATATGACTATTCCAAGCAGTCTTCATATGGTCTCCAAAGGAGTTCTTCCTCCGTGCGGGCAAATCCCATGCAGTTATTGGATGCATATGTACAAAATTCCAGCCGGAATTTCATTGATTCTGGTGAGAGGCGCTATTCTAGTGTTCGCAGTCTTCATTCATCCGACGCTTGGGATTATCAGCCAGCTACAATACATGGTTACCAGACTGCATCCTATCTTAGCCGGGGTATGAAAGATAGAAGTTCTGAAAACATAAATGGTTCAATGCCATTGTCATCACTGAAGTCTCCTTCCACAGGTAATCCGAACTACAGGGATTCCCTTGCATTTGCTCTGGGGAAAAAGTTGCATAATGGCTCAGGTGTAGGCCATCCCCCTGGGTTCGAAAATGTAGCTGTCTCTCGAAATCGCCAACTACAATCTGAGAGGTCCAATTATGATTCCTGCTCCTCTGGAACTTCAGCTAATACAGTCAATTCAGTGAACACTAAGAAGTACCACAGCTTGCCGGACATTTCAGGATACTCCATCCCCCACAAAGCTGGCTACGTGTCTGATAAAAATCTACCATGGGATGGTTCTGTTGGATATGGATCTTTTGCTGGTAGAATGGGTTATGAACCATCTTTATATCCAAATTCTGGATCAAGAACAGGAGCTCATTTGGCCTTCGATGAAGTCTCTCCATCTAAAGTGTACAGAGAGGCACTCTCTTCACAGCTGAGTTCTGGTTTTGACACTGGATCCCTCTGGTCTAGACAGCCTTTTGAGCAGTTTGGTGTTGCTGATAAAATCCATGATGTTGCATTGGAAGGTGCAGGAAGCAGGCCTAATGTAATTGTTCAAGAAACTTCATTTGAGGTTGTAGAGGTGAAACTTCTCCAGTCTGTTCGACTTTGCATTATGAAGCTCTTAAAACTGGAGGGATCTGATTGGTTGTTTAAACAGAATGATGGAATTGATGAGGATCTGATTGATCGTGTAGCAGCAAGGGAAAAGTTTGTTTATGAAATTGAGGCTAGGGAGACAAATCAGGTCATTCATATGGGTGATACTCGCTATTTTCCTTCTGATAGGAAACCTGTTTCTTCGATTAAAAACAATGAGGCAAATGCCTCAAGTCTTTTGTCAGTTCCTAACTGTGGAGAGGGATGTGTGTGGAGAACAGATTTAATAATAAGCTTTGGGGTCTGGTGTATCCACCGTATTCTTGACCTCTCAGTTTTGGAAAGCCGGCCAGAGCTTTGGGGGAAATACACCTATGTGCTCAACCGCCTCCAGGGCATCATCGAACCAGCTTTTTCGAAGCCCCGTACTCCATCGGCCCCATGTTTTTGCCTTCAAGTTCCCACTTCACACCAGCAAAAGTCAAGCCCTCCTCTTTCTAACGGGATGCTACCCCCAACTGTGAAAGCAGGCCGAGGCAAATGCACAACTGCATTAACGTTGCTTGAGCTGATTAAAGATGTGGAGATCGCCATCTCTAGCAGGAAAGGACGTACAGGTACTGCAGCTGGTGATGTGGCTTTTCCAAAGGGGAAGGAAAATTTGGCGTCTGTTCTCAAACGGTACAAGCGAAGGTTATCATCCAACAAGCTAGTTGGCAATCAGGAAGGGACTGGTTCTCGCAAGGTCGCCTCATCAGGATCATACAACCAATAA	3900	0.4385	MEAEALSSEQVKNKMETKRLSTDNPPGFLSRALPAVIPVLLISIGYVDPGKWVASVEGGARFGFDLVAFTLIFNLAAIFCQYLSARVAVITERDLAQICSDEYDTWTCLLLGIQMELSVIMLDLNMILGMAQGLNLIFGWDLFTCVFLTATGAVFHILLAVLLDIEKAKFLGQFVAGFVLLSFILGLLINQSEIPLPMNGILMKLSGESAFMLMSLLGATLVPHNFYLHSSIVQWHKGPKNISKDALCHNHFLAILCVFSGLYLANNMLMTTSANEFSSTGPVLLTFQDALSPMEQVLRSPIALLGFVLILFLANQTTALTWSLGGEVVVNGFLKLDIPGWLHYSTIRVIAVLPALYCVWSSGAEGMYQLLIFTQVLVALQLPSSVIPLFRVAMSKSIMGAHKISQPVELLALVIFIGMLGLNIIFLVEMIFGNSDWAADLRWNVGNGVSVSYSILLIAGLISLCLMLWLAATPLRSANIQVLNWDMPETVSNPLVDGEESYITETVSHEDASVEADEPKPALARTFEYSELASCRPDLPETIMEPDLQANALMLNHSVTPSVSTSESGAVSTVVNDNSDSRSEDQKPIMETNAPIEKNVEIEDYSNAERDDDDGDSWETEESTRVVLANPPSSTSEGPPSFRSISGKSDDGGGSFGSLSRIEGLGRAARRQLAAILDEFWGQLYDFHGQATQEAKAKKIDVLLGQGVDSRPTGSLQKMDACGKDYSEYLVSEGGRASDTSINAGPYDYSKQSSYGLQRSSSSVRANPMQLLDAYVQNSSRNFIDSGERRYSSVRSLHSSDAWDYQPATIHGYQTASYLSRGMKDRSSENINGSMPLSSLKSPSTGNPNYRDSLAFALGKKLHNGSGVGHPPGFENVAVSRNRQLQSERSNYDSCSSGTSANTVNSVNTKKYHSLPDISGYSIPHKAGYVSDKNLPWDGSVGYGSFAGRMGYEPSLYPNSGSRTGAHLAFDEVSPSKVYREALSSQLSSGFDTGSLWSRQPFEQFGVADKIHDVALEGAGSRPNVIVQETSFEVVEVKLLQSVRLCIMKLLKLEGSDWLFKQNDGIDEDLIDRVAAREKFVYEIEARETNQVIHMGDTRYFPSDRKPVSSIKNNEANASSLLSVPNCGEGCVWRTDLIISFGVWCIHRILDLSVLESRPELWGKYTYVLNRLQGIIEPAFSKPRTPSAPCFCLQVPTSHQQKSSPPLSNGMLPPTVKAGRGKCTTALTLLELIKDVEIAISSRKGRTGTAAGDVAFPKGKENLASVLKRYKRRLSSNKLVGNQEGTGSRKVASSGSYNQ*	1300

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr6g0908	1299	PANTHER	ETHYLENE-INSENSITIVE PROTEIN 2	28	1181	-	-
	Tpr6g0908	1299	MobiDBLite	consensus disorder prediction	561	653	-	-
	Tpr6g0908	1299	Pfam	Natural resistance-associated macrophage protein	52	405	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Tpr6g0908	1299	MobiDBLite	consensus disorder prediction	561	579	-	-
	Tpr6g0908	1299	MobiDBLite	consensus disorder prediction	1277	1299	-	-
	Tpr6g0908	1299	MobiDBLite	consensus disorder prediction	623	643	-	-
	Tpr6g0908	1299	PIRSF	EIN2	6	1298	IPR017187	GO:0009873
	Tpr6g0908	1299	PANTHER	SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER	28	1181	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Tpr6g0908	1299	PRINTS	Natural resistance-associated macrophage protein signature	111	137	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Tpr6g0908	1299	PRINTS	Natural resistance-associated macrophage protein signature	213	236	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Tpr6g0908	1299	PRINTS	Natural resistance-associated macrophage protein signature	315	334	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Tpr6g0908	1299	PRINTS	Natural resistance-associated macrophage protein signature	343	360	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Tpr6g0908	1299	PRINTS	Natural resistance-associated macrophage protein signature	375	394	IPR001046	GO:0016020\|GO:0030001\|GO:0046873

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr6g0908	Tpr-Chr6	7962077	7970155	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr6g0908	15	1296	Miscellaneous Gene Families	AT5G03280	52.679	0.0	1234

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr6g0908	-		K14513	cam:101495756	2262.65

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tpr6g0908	6	7962077	7970155	Tpr6g0908	6	7962077	7970155	ECH