Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0885 ATGCCTGCAACTCCATTTTCGCGTTCGTTCTTCGTTTCACAACCGCGCTTCAATTACTATATTACCCCTATCTTCCGTTCACTAACCTGCCAACTCTCTTCTTCACCGTTCCAATTCAATGCCAAATCCTCCACCGTCAGATTCCACTGTGCACTCTCACAAGCCGCGGAGACAGAATCTCCAACCGGAGGTCGGTCTGGTGCGTTAACTCCTACTCCTCCGGTCACCGGAGAAGTTCAGAAAATTGACGTCAATCCTCCCAAGGGTACACGCGACTTCCCGCCTGAAGAAATGCGAATGCGTAATTGGCTATTCAACAATTTCAAAGAGGTGTCGCGGTTGTATGGATTTGAGGAGATTGATTTTCCGGTTCTTGAGTCAGAAGCTTTGTATATTAGGAAAGCAGGGGAGGAGATTAAAGACCAGCTTTACTGTTTTGAAGATCGAGGTAATCGCCGTGTTGCGTTGAGGCCTGAACTTACTCCTTCTTTGGCAAGGCTGGTGATACAGAAAGGGAAGTCCGTATCACTTCCATTGAAATGGTTCACCGTTGGACAATGTTGGCGGTATGAGAGAATGACAAGGGGGCGTCGTCGTGAGCACTACCAGTGGAATATGGATATCATTGGTGTTCCTGGGGTTATGGCTGAAGCAGAGCTTATATCTTCCATTGTTACTTTCTTCAAACGAATAGGAATTACAGAATCAGACGTTGGATTTAAGGTTTCTAGTCGAAAGGTTCTACAAGAAGTATTGAAGTGTTATGGAATTCCTGAAAATATGTTTGGCAAGGTCTGCGTCATTATTGATAAAATTGAGAAAATTCCAGTTGACGAGATAAAGAAAGAGTTGAAAACTGTTGGTCTATCGCAGGAGGCTGTCCAGGAGCTATTGCAAGTCCTTTCTGTAAAGTCATTGACCGAGTTAGAAGAGAAGCTCGGAGGCAGCGGGGAAGCAATTGCTGATCTCAAACAGCTATTCTCACTGGCTGAAAAGTTTGGTTACTCCAAATGGCTTCAATTTGATGCATCAGTTGTTCGTGGCCTTGCTTATTACACTGGCATTGTATTTGAGGGTTTTGACCGAGAAGGAAAGCTCCGAGCTATCTGTGGTGGTGGCCGATATGATCATTTGTTCTCAACTTTTGGTGCTGATGACATTCCTGCTTGTGGTTTTGGATTTGGCGATGCAGTCATAGTCGAATTGCTCAAAGAGAAGGGTCTTCTACCAGAGCTCAGCTTGCAAGTACATAACATTGTTTGTGCCTTGGATGAAGAACTTCAAGGGTATGCTGCTATGGCTGCTAACATTCTCAGAGAAAAAGGACAGAGTGTTGACTTGGTTTTGGAAAGCAAACCACTTAAATGGGTGTTTAAACGTGCAGCCAGAACAAATGCTGAGCGTCTGGTATTAGTAGGAAATTCTGAGTGGCAAAAGGGTATGGTTCGTGTCAAAGTTCTATCCACTGGTGAACAGTATGAGGTTAAACTGGATGATCTAAATTAA 1506 0.4429 MPATPFSRSFFVSQPRFNYYITPIFRSLTCQLSSSPFQFNAKSSTVRFHCALSQAAETESPTGGRSGALTPTPPVTGEVQKIDVNPPKGTRDFPPEEMRMRNWLFNNFKEVSRLYGFEEIDFPVLESEALYIRKAGEEIKDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFTVGQCWRYERMTRGRRREHYQWNMDIIGVPGVMAEAELISSIVTFFKRIGITESDVGFKVSSRKVLQEVLKCYGIPENMFGKVCVIIDKIEKIPVDEIKKELKTVGLSQEAVQELLQVLSVKSLTELEEKLGGSGEAIADLKQLFSLAEKFGYSKWLQFDASVVRGLAYYTGIVFEGFDREGKLRAICGGGRYDHLFSTFGADDIPACGFGFGDAVIVELLKEKGLLPELSLQVHNIVCALDEELQGYAAMAANILREKGQSVDLVLESKPLKWVFKRAARTNAERLVLVGNSEWQKGMVRVKVLSTGEQYEVKLDDLN* 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0885 501 CDD HisRS-like_core 97 404 IPR041715 -
Tpr6g0885 501 Gene3D - 409 501 IPR036621 -
Tpr6g0885 501 Pfam Histidyl-tRNA synthetase 89 393 IPR041715 -
Tpr6g0885 501 Hamap Histidine--tRNA ligase [hisS]. 82 501 IPR015807 GO:0004821|GO:0005524|GO:0006427
Tpr6g0885 501 PIRSF His-tRNA_synth 80 501 IPR004516 GO:0005737
Tpr6g0885 501 PANTHER HISTIDYL-TRNA SYNTHETASE 80 500 IPR004516 GO:0005737
Tpr6g0885 501 TIGRFAM hisS: histidine--tRNA ligase 86 496 IPR015807 GO:0004821|GO:0005524|GO:0006427
Tpr6g0885 501 PANTHER HISTIDINE--TRNA LIGASE, MITOCHONDRIAL-RELATED 80 500 - -
Tpr6g0885 501 SUPERFAMILY Class II aaRS and biotin synthetases 86 407 IPR045864 -
Tpr6g0885 501 Gene3D Bira Bifunctional Protein; Domain 2 80 407 IPR045864 -
Tpr6g0885 501 SUPERFAMILY Class II aaRS ABD-related 418 500 - -
Tpr6g0885 501 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 89 410 IPR006195 -
Tpr6g0885 501 Pfam Anticodon binding domain 420 500 IPR004154 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0885 Tpr-Chr6 7681983 7690235 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0885 K01892 - gmx:100793186 876.315
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0885 6 7681983 7690235 Tpr6g0885 6 7681983 7690235 ECH