Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0856 ATGAGTTCATCCTCAGCTCAGAATTCTGGCCATGATCTTTCTTTCAAGATCTTGTTGATTGGTGATTCTGGTGTTGGAAAAAGTTGCTTACTTGTCACTTTCATTTCCAATTCTTCTGTTGAAGATCTTACACCTACCATTGGTGTTGATTTTAAGATCAAAACACTCACTGTTGGTGGAAAAAGATTAAAACTTACTATTTGGGACACTGCTGGGCAGGAAAGGTTCAGGACTCTAACAAGTTCTTACTACAGAGGAGCACAAGGAATCATTCTAGTTTATGATGTCACAAGGAGAGAAACCTTTACAAACTTATCAGAAGTATGGTCTAAGGAATTGGAACTCTATTCGACTAATCAGGAGTGCGTGAAGATGCTAGTTGGAAATAAAGTTGACAGAGATTCTGAAAGGGCTGTCAGCAGAGAAGAGGGCCTAGCCCTTGCTAAAGAATTGGGGTGTTTGCTTCTTGAATGTAGTGCTAAAACTCGAGAAAATGTGGAGAAATGCTTTGAAGAACTCGCTCTAAAGATAATGGAAGCTCCTAGTCTATTGGAAGAAGGATCAACAGCAACTAAAAGGAATGTTTTAAAACAGAAACAAGATCCACAAGCATCTCGAAATGGTGGCTGTTGCTCTTAA 639 0.3928 MSSSSAQNSGHDLSFKILLIGDSGVGKSCLLVTFISNSSVEDLTPTIGVDFKIKTLTVGGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSEVWSKELELYSTNQECVKMLVGNKVDRDSERAVSREEGLALAKELGCLLLECSAKTRENVEKCFEELALKIMEAPSLLEEGSTATKRNVLKQKQDPQASRNGGCCS* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0856 212 ProSiteProfiles small GTPase Arf family profile. 8 178 - -
Tpr6g0856 212 SMART arf_sub_2 1 181 - -
Tpr6g0856 212 PANTHER SMALL MONOMERIC GTPASE-RELATED 1 212 - -
Tpr6g0856 212 ProSiteProfiles small GTPase Rho family profile. 8 180 - -
Tpr6g0856 212 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 12 200 IPR027417 -
Tpr6g0856 212 Gene3D - 9 211 IPR027417 -
Tpr6g0856 212 ProSiteProfiles small GTPase Rab1 family profile. 10 211 - -
Tpr6g0856 212 SMART ran_sub_2 20 212 - -
Tpr6g0856 212 ProSiteProfiles small GTPase Ras family profile. 3 212 IPR001806 GO:0003924|GO:0005525
Tpr6g0856 212 CDD Rab18 15 177 - -
Tpr6g0856 212 PRINTS Transforming protein P21 ras signature 15 36 - -
Tpr6g0856 212 PRINTS Transforming protein P21 ras signature 38 54 - -
Tpr6g0856 212 PRINTS Transforming protein P21 ras signature 56 78 - -
Tpr6g0856 212 PRINTS Transforming protein P21 ras signature 120 133 - -
Tpr6g0856 212 PRINTS Transforming protein P21 ras signature 155 177 - -
Tpr6g0856 212 Pfam Ras family 16 178 IPR001806 GO:0003924|GO:0005525
Tpr6g0856 212 SMART rho_sub_3 17 181 IPR001806 GO:0003924|GO:0005525
Tpr6g0856 212 SMART ras_sub_4 12 180 - -
Tpr6g0856 212 TIGRFAM small_GTP: small GTP-binding protein domain 15 172 IPR005225 GO:0005525
Tpr6g0856 212 PANTHER DRAB5-RELATED 1 212 - -
Tpr6g0856 212 MobiDBLite consensus disorder prediction 193 212 - -
Tpr6g0856 212 SMART rab_sub_5 15 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0856 Tpr-Chr6 7369083 7372134 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0856 9 180 EF-hand Containing Proteins AT5G27540 28.324 1.67e-11 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0856 K07910 - gmx:100799887 364.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0856 6 7369083 7372134 Tpr1g4117 1 47247327 47253590 PCT